NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	LLNCDO700_RS03305	Genome accession	NZ_CP069179
Coordinates	641792..642391 (-)	Length	199 a.a.
NCBI ID	WP_011834647.1	Uniprot ID	A0A166TF89
Organism	Lactococcus cremoris strain NCDO700
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 636792..647391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLNCDO700_RS03295 (LLNCDO700_03265)	acnA	637928..640474 (+)	2547	WP_259691994.1	aconitate hydratase AcnA	-
LLNCDO700_RS03300 (LLNCDO700_03270)	icd	640494..641732 (+)	1239	WP_011834646.1	NADP-dependent isocitrate dehydrogenase	-
LLNCDO700_RS03305 (LLNCDO700_03275)	clpP	641792..642391 (-)	600	WP_011834647.1	ATP-dependent Clp protease proteolytic subunit	Regulator
LLNCDO700_RS03310 (LLNCDO700_03280)	-	642587..643117 (+)	531	WP_011834648.1	hypothetical protein	-
LLNCDO700_RS03315 (LLNCDO700_03285)	spx	643288..643686 (+)	399	WP_259691995.1	transcriptional regulator Spx	-
LLNCDO700_RS03320 (LLNCDO700_13675)	-	643839..643973 (-)	135	WP_011834649.1	hypothetical protein	-
LLNCDO700_RS03325 (LLNCDO700_03290)	-	644070..645233 (-)	1164	WP_011834650.1	ABC transporter permease	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 22052.21 Da Isoelectric Point: 4.7423

                                >NTDB_id=532731 LLNCDO700_RS03305 WP_011834647.1 641792..642391(-) (clpP) [Lactococcus cremoris strain NCDO700]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN

SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=532731 LLNCDO700_RS03305 WP_011834647.1 641792..642391(-) (clpP) [Lactococcus cremoris strain NCDO700]

ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA

AGACCGCATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG

CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACACCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT

ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG

CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA

CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT

TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG

TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A166TF89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Lactococcus lactis subsp. cremoris KW2	100	100	1
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	99.497	100	0.995
clpP	Streptococcus mutans UA159	87.245	98.492	0.859
clpP	Streptococcus thermophilus LMD-9	86.735	98.492	0.854
clpP	Streptococcus thermophilus LMG 18311	86.735	98.492	0.854
clpP	Streptococcus pyogenes MGAS315	85.714	98.492	0.844
clpP	Streptococcus pyogenes JRS4	85.714	98.492	0.844
clpP	Streptococcus pneumoniae D39	84.615	97.99	0.829
clpP	Streptococcus pneumoniae TIGR4	84.615	97.99	0.829
clpP	Streptococcus pneumoniae R6	84.615	97.99	0.829
clpP	Streptococcus pneumoniae Rx1	84.615	97.99	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	95.477	0.553
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553

Detailed information NTG0532731