Detailed information NTG0532408

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: MHHHKEFG_RS16535
• Genome accession: NZ_CP069125
• Coordinates: 3187702..3188388 (-)
• Length: 228 a.a.
• NCBI ID: WP_189288297.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain D5
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3182702..3193388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MHHHKEFG_RS16500 (MHHHKEFG_03367)	fliW	3182835..3183269 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
MHHHKEFG_RS16505 (MHHHKEFG_03368)	-	3183298..3183876 (-)	579	WP_034660143.1	DUF6470 family protein	-
MHHHKEFG_RS16510 (MHHHKEFG_03369)	flgL	3183925..3184836 (-)	912	WP_066031682.1	flagellar hook-associated protein FlgL	-
MHHHKEFG_RS16515 (MHHHKEFG_03370)	flgK	3184846..3186366 (-)	1521	WP_060597394.1	flagellar hook-associated protein FlgK	-
MHHHKEFG_RS16520 (MHHHKEFG_03371)	-	3186382..3186864 (-)	483	WP_034660146.1	flagellar protein FlgN	-
MHHHKEFG_RS16525 (MHHHKEFG_03372)	flgM	3186883..3187146 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
MHHHKEFG_RS16530 (MHHHKEFG_03373)	-	3187226..3187645 (-)	420	WP_066031681.1	TIGR03826 family flagellar region protein	-
MHHHKEFG_RS16535 (MHHHKEFG_03374)	comFC	3187702..3188388 (-)	687	WP_189288297.1	ComF family protein	Machinery gene
MHHHKEFG_RS16540 (MHHHKEFG_03375)	-	3188385..3188678 (-)	294	WP_060597398.1	late competence development ComFB family protein	-
MHHHKEFG_RS16545 (MHHHKEFG_03376)	comFA	3188745..3190124 (-)	1380	WP_142393300.1	DEAD/DEAH box helicase	Machinery gene
MHHHKEFG_RS16550 (MHHHKEFG_03377)	-	3190245..3191087 (-)	843	WP_034660152.1	DegV family protein	-
MHHHKEFG_RS16555 (MHHHKEFG_03378)	degU	3191305..3191994 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
MHHHKEFG_RS16560 (MHHHKEFG_03379)	degS	3192059..3193234 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.47 Da
• Isoelectric Point: 9.9327

>NTDB_id=532408 MHHHKEFG_RS16535 WP_189288297.1 3187702..3188388(-) (comFC) [Bacillus pumilus strain D5]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=532408 MHHHKEFG_RS16535 WP_189288297.1 3187702..3188388(-) (comFC) [Bacillus pumilus strain D5]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395