Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   MHHHKEFG_RS16560 Genome accession   NZ_CP069125
Coordinates   3192059..3193234 (-) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus pumilus strain D5     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187059..3198234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHHHKEFG_RS16530 (MHHHKEFG_03373) - 3187226..3187645 (-) 420 WP_066031681.1 TIGR03826 family flagellar region protein -
  MHHHKEFG_RS16535 (MHHHKEFG_03374) comFC 3187702..3188388 (-) 687 WP_189288297.1 ComF family protein Machinery gene
  MHHHKEFG_RS16540 (MHHHKEFG_03375) - 3188385..3188678 (-) 294 WP_060597398.1 late competence development ComFB family protein -
  MHHHKEFG_RS16545 (MHHHKEFG_03376) comFA 3188745..3190124 (-) 1380 WP_142393300.1 DEAD/DEAH box helicase Machinery gene
  MHHHKEFG_RS16550 (MHHHKEFG_03377) - 3190245..3191087 (-) 843 WP_034660152.1 DegV family protein -
  MHHHKEFG_RS16555 (MHHHKEFG_03378) degU 3191305..3191994 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHHHKEFG_RS16560 (MHHHKEFG_03379) degS 3192059..3193234 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHHHKEFG_RS16565 (MHHHKEFG_03380) - 3193456..3194124 (+) 669 WP_012011434.1 YigZ family protein -
  MHHHKEFG_RS16570 (MHHHKEFG_03381) - 3194109..3195200 (+) 1092 WP_066031680.1 LCP family protein -
  MHHHKEFG_RS16575 (MHHHKEFG_03382) - 3195236..3196303 (-) 1068 WP_034660156.1 glycosyltransferase family 4 protein -
  MHHHKEFG_RS16580 (MHHHKEFG_03383) tuaH 3196438..3197634 (-) 1197 WP_066031804.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=532411 MHHHKEFG_RS16560 WP_003213166.1 3192059..3193234(-) (degS) [Bacillus pumilus strain D5]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=532411 MHHHKEFG_RS16560 WP_003213166.1 3192059..3193234(-) (degS) [Bacillus pumilus strain D5]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTCGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTACAAGTGGAACTCACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTGTCCCGGGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841