Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JOA01_RS06445 Genome accession   NZ_CP069079
Coordinates   1265026..1265616 (-) Length   196 a.a.
NCBI ID   WP_217374005.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260026..1270616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS06420 (JOA01_06425) - 1260406..1261170 (-) 765 WP_024391941.1 ABC transporter ATP-binding protein -
  JOA01_RS06425 (JOA01_06430) - 1261170..1262117 (-) 948 WP_217374001.1 branched-chain amino acid ABC transporter permease -
  JOA01_RS06430 (JOA01_06435) - 1262120..1263007 (-) 888 WP_217374002.1 branched-chain amino acid ABC transporter permease -
  JOA01_RS06435 (JOA01_06440) - 1263288..1264457 (-) 1170 WP_217374003.1 ABC transporter substrate-binding protein -
  JOA01_RS06440 (JOA01_06445) - 1264622..1264909 (-) 288 WP_217374004.1 DUF2129 domain-containing protein -
  JOA01_RS06445 (JOA01_06450) clpP 1265026..1265616 (-) 591 WP_217374005.1 ATP-dependent Clp protease proteolytic subunit Regulator
  JOA01_RS06450 (JOA01_06455) upp 1265946..1266575 (-) 630 WP_024391947.1 uracil phosphoribosyltransferase -
  JOA01_RS06455 (JOA01_06460) - 1266655..1268271 (-) 1617 WP_217374006.1 alpha-glucosidase -
  JOA01_RS06460 (JOA01_06465) gtfA 1268341..1269789 (-) 1449 WP_217374007.1 sucrose phosphorylase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21557.69 Da        Isoelectric Point: 5.0120

>NTDB_id=532178 JOA01_RS06445 WP_217374005.1 1265026..1265616(-) (clpP) [Streptococcus parasuis strain BS26]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGGGTQQTDMAIAAEHLLNTRNKLEKILAENSGK
TVEQIHKDAERDYWMSAEETLAYGFIDQIMYNTKTK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=532178 JOA01_RS06445 WP_217374005.1 1265026..1265616(-) (clpP) [Streptococcus parasuis strain BS26]
ATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTCACGTTTGCTGAAAGACCGCAT
CATTATGTTGACAGGTCCGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGCTTTTCCTAGATGCACAAGATC
CAACAAAAGATATTTATCTCTATGTAAATACACCAGGGGGTTCTGTTTCTGCAGGTCTTGCCATCGTGGATACAATGAAC
TTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAATCATTGCTTCAAGTGGTACAAA
AGGCAAACGTTTCATGCTTCCTAATGCAGAATACCTGATTCACCAACCAATGGGAGGCACTGGTGGTGGTACTCAGCAAA
CTGACATGGCAATTGCAGCAGAACACCTCTTAAATACTCGTAACAAGTTAGAAAAAATCTTGGCGGAAAATTCTGGTAAG
ACAGTTGAACAAATCCATAAGGATGCAGAACGTGACTATTGGATGTCTGCTGAAGAAACCTTGGCATACGGCTTTATCGA
CCAAATTATGTATAATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

91.327

100

0.913
  clpP Streptococcus pyogenes JRS4

91.327

100

0.913
  clpP Streptococcus mutans UA159

88.776

100

0.888
  clpP Streptococcus pneumoniae R6

90.104

97.959

0.883
  clpP Streptococcus pneumoniae Rx1

90.104

97.959

0.883
  clpP Streptococcus pneumoniae D39

90.104

97.959

0.883
  clpP Streptococcus pneumoniae TIGR4

90.104

97.959

0.883
  clpP Streptococcus thermophilus LMG 18311

88.265

100

0.883
  clpP Streptococcus thermophilus LMD-9

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.694

100

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.184

100

0.842
  clpP Bacillus subtilis subsp. subtilis str. 168

58.673

100

0.587
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.421

96.939

0.566