Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   JOA01_RS02960 Genome accession   NZ_CP069079
Coordinates   579777..580481 (+) Length   234 a.a.
NCBI ID   WP_024391260.1    Uniprot ID   A0A9X4MIJ1
Organism   Streptococcus parasuis strain BS26     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 574777..585481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS02940 (JOA01_02945) - 576536..577195 (-) 660 WP_217374818.1 amino acid ABC transporter permease -
  JOA01_RS02945 (JOA01_02950) - 577210..577908 (-) 699 WP_217374819.1 amino acid ABC transporter permease -
  JOA01_RS02950 (JOA01_02955) - 577922..578761 (-) 840 WP_217374820.1 transporter substrate-binding domain-containing protein -
  JOA01_RS02955 (JOA01_02960) - 578771..579532 (-) 762 WP_130554350.1 amino acid ABC transporter ATP-binding protein -
  JOA01_RS02960 (JOA01_02965) micA 579777..580481 (+) 705 WP_024391260.1 response regulator YycF Regulator
  JOA01_RS02965 (JOA01_02970) micB 580474..581823 (+) 1350 WP_217374821.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JOA01_RS02970 (JOA01_02975) vicX 581830..582633 (+) 804 WP_217374822.1 MBL fold metallo-hydrolase Regulator
  JOA01_RS02975 (JOA01_02980) pbp2b 582910..584985 (+) 2076 WP_274504674.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26727.72 Da        Isoelectric Point: 4.8061

>NTDB_id=532164 JOA01_RS02960 WP_024391260.1 579777..580481(+) (micA) [Streptococcus parasuis strain BS26]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALDIFEAEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQGAVESSGTPELVIGDLVIVPDAFVAKKHGKELELT
HREFELLYHLAKHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYFIKAYD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=532164 JOA01_RS02960 WP_024391260.1 579777..580481(+) (micA) [Streptococcus parasuis strain BS26]
ATGAAGAAAATTTTAATTGTTGATGATGAGAAACCAATCTCGGATATTATTAAGTTCAATATGACACGTGAAGGATATGA
GGTAGTTACTGCGTTTGATGGACGTGAGGCGCTTGATATTTTTGAAGCAGAGTTTCCAGACATTGTTATTTTAGATTTAA
TGCTTCCAGAAATAGATGGATTAGAAGTAGCACGGACGATTCGAAAAACAAGTAATGTTCCTATTTTAATGTTGTCAGCT
AAAGATAGTGAGTTTGATAAAGTTATTGGGCTTGAAATTGGTGCGGATGACTATGTGACAAAGCCATTCTCAAACCGTGA
ATTACAGGCACGTGTAAAAGCTCTTCTTCGTCGAAGTGAATTGGCTGAGACGCAAGGAGCAGTTGAATCATCTGGTACTC
CAGAATTGGTAATCGGTGATTTGGTAATTGTTCCAGATGCTTTTGTAGCTAAGAAACATGGAAAAGAACTTGAACTAACA
CACCGTGAATTTGAATTATTGTATCATTTGGCCAAGCACATTGGGCAAGTCATGACGCGAGAGCATCTACTTGAGACTGT
TTGGGGATATGATTATTTTGGAGATGTACGTACTGTGGACGTGACAGTTCGACGCTTGCGTGAAAAAATTGAAGACACTC
CAAGTCGTCCGGAATACATCTTGACACGCAGGGGAGTAGGTTATTTTATAAAAGCTTATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

84.416

98.718

0.833
  vicR Streptococcus mutans UA159

80.851

100

0.812
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.043

98.291

0.423
  scnR Streptococcus mutans UA159

36.709

100

0.372