Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JOA01_RS02970 Genome accession   NZ_CP069079
Coordinates   581830..582633 (+) Length   267 a.a.
NCBI ID   WP_217374822.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 576830..587633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS02945 (JOA01_02950) - 577210..577908 (-) 699 WP_217374819.1 amino acid ABC transporter permease -
  JOA01_RS02950 (JOA01_02955) - 577922..578761 (-) 840 WP_217374820.1 transporter substrate-binding domain-containing protein -
  JOA01_RS02955 (JOA01_02960) - 578771..579532 (-) 762 WP_130554350.1 amino acid ABC transporter ATP-binding protein -
  JOA01_RS02960 (JOA01_02965) micA 579777..580481 (+) 705 WP_024391260.1 response regulator YycF Regulator
  JOA01_RS02965 (JOA01_02970) micB 580474..581823 (+) 1350 WP_217374821.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JOA01_RS02970 (JOA01_02975) vicX 581830..582633 (+) 804 WP_217374822.1 MBL fold metallo-hydrolase Regulator
  JOA01_RS02975 (JOA01_02980) pbp2b 582910..584985 (+) 2076 WP_274504674.1 penicillin-binding protein PBP2B -
  JOA01_RS02980 (JOA01_02985) recR 584994..585590 (+) 597 WP_172036408.1 recombination mediator RecR -
  JOA01_RS02985 (JOA01_02990) - 585699..586745 (+) 1047 WP_217374823.1 D-alanine--D-alanine ligase -
  JOA01_RS02990 (JOA01_02995) - 586858..587238 (+) 381 WP_172025425.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29611.58 Da        Isoelectric Point: 5.3289

>NTDB_id=532166 JOA01_RS02970 WP_217374822.1 581830..582633(+) (vicX) [Streptococcus parasuis strain BS26]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTTKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=532166 JOA01_RS02970 WP_217374822.1 581830..582633(+) (vicX) [Streptococcus parasuis strain BS26]
ATGATCGGAACTGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTGTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTAGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGTTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCTTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCTGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCACTAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACAGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772