Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   JOA01_RS02965 Genome accession   NZ_CP069079
Coordinates   580474..581823 (+) Length   449 a.a.
NCBI ID   WP_217374821.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 575474..586823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS02940 (JOA01_02945) - 576536..577195 (-) 660 WP_217374818.1 amino acid ABC transporter permease -
  JOA01_RS02945 (JOA01_02950) - 577210..577908 (-) 699 WP_217374819.1 amino acid ABC transporter permease -
  JOA01_RS02950 (JOA01_02955) - 577922..578761 (-) 840 WP_217374820.1 transporter substrate-binding domain-containing protein -
  JOA01_RS02955 (JOA01_02960) - 578771..579532 (-) 762 WP_130554350.1 amino acid ABC transporter ATP-binding protein -
  JOA01_RS02960 (JOA01_02965) micA 579777..580481 (+) 705 WP_024391260.1 response regulator YycF Regulator
  JOA01_RS02965 (JOA01_02970) micB 580474..581823 (+) 1350 WP_217374821.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JOA01_RS02970 (JOA01_02975) vicX 581830..582633 (+) 804 WP_217374822.1 MBL fold metallo-hydrolase Regulator
  JOA01_RS02975 (JOA01_02980) pbp2b 582910..584985 (+) 2076 WP_274504674.1 penicillin-binding protein PBP2B -
  JOA01_RS02980 (JOA01_02985) recR 584994..585590 (+) 597 WP_172036408.1 recombination mediator RecR -
  JOA01_RS02985 (JOA01_02990) - 585699..586745 (+) 1047 WP_217374823.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51009.39 Da        Isoelectric Point: 4.5257

>NTDB_id=532165 JOA01_RS02965 WP_217374821.1 580474..581823(+) (micB) [Streptococcus parasuis strain BS26]
MINQLRYLITTAEFWFVVILIGFLMALTVLLIENYRDNKQIQLLNKKVGALIDGNYSDVLDLRGSPEITEMANSLNDLSE
VIRLTNDNLEQEKIRLSSILSYMSDGVIATDRIGRIIMVNDMAQKQLGLKDHKQEQYFLLDVLELQDQYSLRELLSQTPE
IVLEKVNENQELLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGEMDVELINFTAFITFILNRFDQMKNSDVGKTYAIIRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGNITFSMKTTDSQLILSISDEGLGIPKADLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWEEVAEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=532165 JOA01_RS02965 WP_217374821.1 580474..581823(+) (micB) [Streptococcus parasuis strain BS26]
ATGATTAATCAATTACGCTATCTAATTACAACAGCTGAATTTTGGTTTGTTGTTATTTTGATCGGATTTCTAATGGCGTT
GACAGTATTGTTGATAGAAAACTATCGTGACAATAAGCAGATTCAATTACTCAATAAAAAAGTTGGCGCCTTGATAGATG
GTAATTACTCTGATGTATTGGATTTGCGAGGAAGTCCAGAGATTACCGAAATGGCAAATTCACTGAATGATTTGTCAGAA
GTAATCCGTTTAACGAACGATAACCTAGAACAAGAAAAAATCCGGCTCAGTTCCATTCTTTCCTACATGAGTGATGGAGT
CATTGCTACAGATCGTATTGGCCGAATTATCATGGTCAATGATATGGCGCAGAAACAACTGGGGTTAAAAGATCATAAAC
AGGAGCAATATTTTTTACTTGATGTTCTAGAACTTCAAGACCAATATAGTCTGCGTGAGTTGCTATCTCAAACACCTGAA
ATCGTCTTAGAAAAAGTTAATGAGAATCAAGAATTACTGACCTTACGAGCTAATTTTGCAACGATTAGGAGTGAAAGTGG
GCTCATATCAGGGTTGGTTGTTGTCCTACATGATATGACGGAGCAGGCCAAGGAGGAACGTGAGCGCAGACTGTTTGTTT
CTAATGTCAGTCACGAATTGCGTACACCGTTGACCTCGGTTAAATCATATTTGGAAGCCTTGGATGAGGGAGCTCTGACC
GAATCGGTTGCCCCAAGTTTTGTCAAGGTATCCTTAGATGAAACCAACCGGATGATGCGGATGATTACAGATCTTTTAAG
TTTATCTCGCATTGATAATCAGGTTGGAGAGATGGATGTAGAGTTAATCAATTTTACAGCCTTTATCACTTTTATCTTGA
ATCGCTTTGATCAGATGAAGAATTCTGATGTTGGTAAGACCTACGCTATTATTCGTGATTACCAGATTAGTCCAATTTGG
GTTGAAATTGATACCGATAAGATGACGCAGGTACTGGATAATATTTTGAATAATGCTATCAAGTATTCTCCAGATGGGGG
AAACATTACCTTTAGTATGAAAACGACAGATAGTCAGCTTATTCTTTCTATTTCAGATGAAGGTTTGGGAATTCCTAAAG
CTGATTTACCTAAAATATTTGACCGTTTCTATCGAGTTGATAAAGCGCGTTCGAGAGCCCAAGGAGGCACAGGTTTAGGT
TTGGCGATTGCAAAAGAGATTGTAAAGCAACACAAAGGTTTCATTTGGGCTAAAAGTGAGTATGGACATGGTTCGACATT
TACGATTGTCTTACCATATAGTAAGGATATTGCACTGGATGAGTGGGAAGAGGTTGCTGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.266

97.105

0.673
  vicK Streptococcus mutans UA159

69.479

89.755

0.624