Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U769_RS28945 Genome accession   NC_023019
Coordinates   6269211..6270704 (+) Length   497 a.a.
NCBI ID   WP_014604121.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa MTB-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6264211..6275704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U769_RS28915 (U769_29080) - 6264332..6265246 (-) 915 WP_003096438.1 fimbrial protein -
  U769_RS28920 (U769_29085) sutA 6265683..6266000 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  U769_RS28925 (U769_29090) - 6266078..6266503 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U769_RS28930 (U769_29095) - 6266764..6268092 (-) 1329 WP_003109815.1 ammonium transporter -
  U769_RS28935 (U769_29100) glnK 6268132..6268470 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  U769_RS28940 (U769_29105) - 6268910..6269170 (+) 261 WP_023096320.1 accessory factor UbiK family protein -
  U769_RS28945 (U769_29110) comM 6269211..6270704 (+) 1494 WP_014604121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U769_RS28950 (U769_29115) betT 6270829..6272814 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  U769_RS28955 (U769_29120) pchP 6272857..6273906 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  U769_RS28960 (U769_29125) - 6274057..6274974 (-) 918 WP_004352313.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53113.05 Da        Isoelectric Point: 7.9587

>NTDB_id=53102 U769_RS28945 WP_014604121.1 6269211..6270704(+) (comM) [Pseudomonas aeruginosa MTB-1]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTTLDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=53102 U769_RS28945 WP_014604121.1 6269211..6270704(+) (comM) [Pseudomonas aeruginosa MTB-1]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCACCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTACCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCTGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.467

100

0.561
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.048

99.799

0.559
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Acinetobacter baylyi ADP1

53.414

100

0.535
  comM Legionella pneumophila str. Paris

49.901

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471
  comM Helicobacter pylori 26695

38.845

100

0.392

Multiple sequence alignment