Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K8P00_RS04130 Genome accession   NZ_CP082861
Coordinates   821220..821753 (+) Length   177 a.a.
NCBI ID   WP_049257862.1    Uniprot ID   -
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 816220..826753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS04110 (K8P00_04075) - 816270..818636 (-) 2367 WP_003823237.1 penicillin-binding protein 1A -
  K8P00_RS04115 (K8P00_04080) pilM 818768..819868 (+) 1101 WP_064086496.1 type IV pilus biogenesis protein PilM -
  K8P00_RS04120 (K8P00_04085) pilN 819870..820559 (+) 690 WP_003823234.1 PilN domain-containing protein Machinery gene
  K8P00_RS04125 (K8P00_04090) - 820575..821189 (+) 615 WP_003823233.1 type 4a pilus biogenesis protein PilO -
  K8P00_RS04130 (K8P00_04095) pilP 821220..821753 (+) 534 WP_049257862.1 pilus assembly protein PilP Machinery gene
  K8P00_RS04135 (K8P00_04100) pilQ 821775..823898 (+) 2124 WP_003823230.1 type IV pilus secretin family protein Machinery gene
  K8P00_RS04140 (K8P00_04105) - 823928..824482 (+) 555 WP_003823228.1 shikimate kinase -
  K8P00_RS04145 (K8P00_04110) aroB 824482..825558 (+) 1077 WP_035580151.1 3-dehydroquinate synthase -
  K8P00_RS04150 - 825743..826084 (-) 342 WP_003823223.1 hypothetical protein -
  K8P00_RS04155 - 826462..826626 (+) 165 WP_223417330.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19656.09 Da        Isoelectric Point: 6.9546

>NTDB_id=530548 K8P00_RS04130 WP_049257862.1 821220..821753(+) (pilP) [Eikenella corrodens strain FDAARGOS_1474]
MKKNILWCSAVLLLTACSLTEGDLQQWMDNAQAEARSKVRQPQIPTISKSPEYVDPVINGLNIFDPKRLRVNQQSGINAP
NPDRPKEILENFSLESLRYVGSIKRGGQISAFVEAGGHTYTVRVGNYLGQNYGQITAITPDKLILSEVTEDSYGAWQRRT
AELELNTSDASNQSKSN

Nucleotide


Download         Length: 534 bp        

>NTDB_id=530548 K8P00_RS04130 WP_049257862.1 821220..821753(+) (pilP) [Eikenella corrodens strain FDAARGOS_1474]
ATGAAGAAAAATATACTATGGTGTTCAGCAGTTCTTTTGCTGACAGCCTGTTCTTTGACAGAGGGTGATTTACAGCAGTG
GATGGATAATGCCCAGGCAGAAGCAAGAAGTAAGGTGCGCCAACCACAGATACCGACTATTTCAAAGTCTCCTGAGTATG
TAGACCCTGTAATTAATGGATTGAATATATTTGATCCTAAACGGCTGCGTGTGAACCAACAATCAGGTATTAATGCTCCG
AACCCGGATAGGCCGAAAGAAATTCTGGAGAACTTTAGTTTAGAAAGCTTGCGTTATGTGGGTTCCATTAAACGAGGTGG
TCAGATTTCTGCCTTCGTTGAAGCTGGTGGGCATACCTACACAGTACGCGTTGGCAATTATCTTGGCCAAAACTATGGGC
AAATTACAGCTATTACTCCGGATAAGTTGATCTTATCGGAAGTAACTGAAGACAGCTATGGTGCATGGCAACGTCGAACA
GCGGAGTTGGAGTTAAATACTTCAGACGCTTCTAACCAATCAAAATCTAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(23-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

47.399

97.74

0.463