Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | LLUC047_RS04005 | Genome accession | NZ_CP068658 |
| Coordinates | 760598..761197 (-) | Length | 199 a.a. |
| NCBI ID | WP_011834647.1 | Uniprot ID | A0A166TF89 |
| Organism | Lactococcus cremoris strain UC047 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 761385..775834 | 760598..761197 | flank | 188 |
Gene organization within MGE regions
Location: 760598..775834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC047_RS04005 (LLUC047_03950) | clpP | 760598..761197 (-) | 600 | WP_011834647.1 | ATP-dependent Clp protease proteolytic subunit | Regulator |
| LLUC047_RS04010 (LLUC047_03955) | - | 761393..761923 (+) | 531 | WP_011675638.1 | hypothetical protein | - |
| LLUC047_RS04015 (LLUC047_03960) | spx | 762093..762491 (+) | 399 | WP_003129597.1 | transcriptional regulator Spx | - |
| LLUC047_RS04020 (LLUC047_13910) | - | 762642..762776 (-) | 135 | WP_014572996.1 | hypothetical protein | - |
| LLUC047_RS04025 (LLUC047_03965) | - | 762873..764036 (-) | 1164 | WP_021216083.1 | ABC transporter permease | - |
| LLUC047_RS04030 (LLUC047_03970) | - | 764364..767044 (+) | 2681 | Protein_767 | cation-translocating P-type ATPase | - |
| LLUC047_RS04035 (LLUC047_03975) | - | 767103..768214 (+) | 1112 | WP_262668432.1 | IS3-like element IS981 family transposase | - |
| LLUC047_RS04040 (LLUC047_13915) | - | 768382..768528 (+) | 147 | WP_011675641.1 | hypothetical protein | - |
| LLUC047_RS04045 (LLUC047_03985) | - | 768635..769525 (+) | 891 | WP_205536422.1 | IS982 family transposase | - |
| LLUC047_RS04050 (LLUC047_13920) | - | 769648..770133 (+) | 486 | Protein_771 | IS982-like element IS982B family transposase | - |
| LLUC047_RS04055 (LLUC047_03990) | istB | 770218..770976 (-) | 759 | WP_003331414.1 | IS21-like element IS712 family helper ATPase IstB | - |
| LLUC047_RS04060 (LLUC047_03995) | istA | 770988..772211 (-) | 1224 | WP_003331415.1 | IS21-like element IS712 family transposase | - |
| LLUC047_RS04065 (LLUC047_04000) | - | 772409..773227 (+) | 819 | WP_031288961.1 | polysaccharide deacetylase family protein | - |
| LLUC047_RS04070 (LLUC047_04005) | - | 773397..774544 (+) | 1148 | WP_134794176.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 22052.21 Da Isoelectric Point: 4.7423
>NTDB_id=530253 LLUC047_RS04005 WP_011834647.1 760598..761197(-) (clpP) [Lactococcus cremoris strain UC047]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK
Nucleotide
Download Length: 600 bp
>NTDB_id=530253 LLUC047_RS04005 WP_011834647.1 760598..761197(-) (clpP) [Lactococcus cremoris strain UC047]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Lactococcus lactis subsp. cremoris KW2 |
100 |
100 |
1 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
99.497 |
100 |
0.995 |
| clpP | Streptococcus mutans UA159 |
87.245 |
98.492 |
0.859 |
| clpP | Streptococcus thermophilus LMD-9 |
86.735 |
98.492 |
0.854 |
| clpP | Streptococcus thermophilus LMG 18311 |
86.735 |
98.492 |
0.854 |
| clpP | Streptococcus pyogenes MGAS315 |
85.714 |
98.492 |
0.844 |
| clpP | Streptococcus pyogenes JRS4 |
85.714 |
98.492 |
0.844 |
| clpP | Streptococcus pneumoniae D39 |
84.615 |
97.99 |
0.829 |
| clpP | Streptococcus pneumoniae TIGR4 |
84.615 |
97.99 |
0.829 |
| clpP | Streptococcus pneumoniae R6 |
84.615 |
97.99 |
0.829 |
| clpP | Streptococcus pneumoniae Rx1 |
84.615 |
97.99 |
0.829 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
57.895 |
95.477 |
0.553 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.995 |
96.985 |
0.553 |