Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   JHT21_RS13240 Genome accession   NZ_CP068638
Coordinates   2773612..2774190 (-) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain VP120     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768612..2779190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT21_RS13215 (JHT21_13180) aroB 2768902..2770002 (-) 1101 WP_005496576.1 3-dehydroquinate synthase -
  JHT21_RS13220 (JHT21_13185) aroK 2770034..2770552 (-) 519 WP_005381319.1 shikimate kinase AroK -
  JHT21_RS13225 (JHT21_13190) pilQ 2770741..2772489 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  JHT21_RS13230 (JHT21_13195) pilP 2772521..2773036 (-) 516 WP_017449464.1 pilus assembly protein PilP Machinery gene
  JHT21_RS13235 (JHT21_13200) pilO 2773026..2773619 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  JHT21_RS13240 (JHT21_13205) pilN 2773612..2774190 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  JHT21_RS13245 (JHT21_13210) pilM 2774174..2775190 (-) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  JHT21_RS13250 (JHT21_13215) - 2775333..2777903 (+) 2571 WP_029804285.1 penicillin-binding protein 1A -
  JHT21_RS13255 (JHT21_13220) oxyR 2777959..2778867 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=530132 JHT21_RS13240 WP_015297396.1 2773612..2774190(-) (pilN) [Vibrio parahaemolyticus strain VP120]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=530132 JHT21_RS13240 WP_015297396.1 2773612..2774190(-) (pilN) [Vibrio parahaemolyticus strain VP120]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243VIJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594