Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JHT10_RS20585 Genome accession   NZ_CP068631
Coordinates   2632367..2633590 (+) Length   407 a.a.
NCBI ID   WP_029804706.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627367..2638590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS20565 (JHT10_20525) ampD 2628409..2628960 (-) 552 WP_005479703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JHT10_RS20570 (JHT10_20530) nadC 2629053..2629940 (+) 888 WP_025523107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JHT10_RS20575 (JHT10_20535) - 2630204..2630656 (+) 453 WP_029846089.1 pilin -
  JHT10_RS20580 (JHT10_20540) pilB 2630658..2632343 (+) 1686 WP_029804705.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JHT10_RS20585 (JHT10_20545) pilC 2632367..2633590 (+) 1224 WP_029804706.1 type II secretion system F family protein Machinery gene
  JHT10_RS20590 (JHT10_20550) pilD 2633655..2634524 (+) 870 WP_025501249.1 prepilin peptidase Machinery gene
  JHT10_RS20595 (JHT10_20555) coaE 2634525..2635139 (+) 615 WP_005480887.1 dephospho-CoA kinase -
  JHT10_RS20600 (JHT10_20560) zapD 2635167..2635907 (+) 741 WP_023624252.1 cell division protein ZapD -
  JHT10_RS20605 (JHT10_20565) yacG 2635976..2636170 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  JHT10_RS20610 (JHT10_20570) rplS 2636585..2636938 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  JHT10_RS20615 (JHT10_20575) trmD 2636980..2637723 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JHT10_RS20620 (JHT10_20580) rimM 2637751..2638299 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  JHT10_RS20625 (JHT10_20585) rpsP 2638328..2638576 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45236.45 Da        Isoelectric Point: 10.3852

>NTDB_id=530080 JHT10_RS20585 WP_029804706.1 2632367..2633590(+) (pilC) [Vibrio parahaemolyticus strain TJ-20]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSICVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=530080 JHT10_RS20585 WP_029804706.1 2632367..2633590(+) (pilC) [Vibrio parahaemolyticus strain TJ-20]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAGGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTAAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCTGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACAAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCCGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398