Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JLK41_RS02615 Genome accession   NZ_CP068551
Coordinates   557097..559208 (+) Length   703 a.a.
NCBI ID   WP_210390276.1    Uniprot ID   -
Organism   Pseudomonas khazarica strain ODT-83     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552097..564208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLK41_RS02595 (JLK41_02595) comM 554264..555328 (+) 1065 WP_037049850.1 pilus assembly protein PilM Machinery gene
  JLK41_RS02600 (JLK41_02600) pilN 555328..555900 (+) 573 WP_047590037.1 type 4a pilus biogenesis protein PilN -
  JLK41_RS02605 (JLK41_02605) pilO 555897..556517 (+) 621 WP_210390274.1 type 4a pilus biogenesis protein PilO -
  JLK41_RS02610 (JLK41_02610) pilP 556517..557041 (+) 525 WP_210390275.1 pilus assembly protein PilP -
  JLK41_RS02615 (JLK41_02615) pilQ 557097..559208 (+) 2112 WP_210390276.1 type IV pilus secretin PilQ Machinery gene
  JLK41_RS02620 (JLK41_02620) aroK 559214..559732 (+) 519 WP_080757073.1 shikimate kinase AroK -
  JLK41_RS02625 (JLK41_02625) aroB 559784..560887 (+) 1104 WP_210390277.1 3-dehydroquinate synthase -
  JLK41_RS02630 (JLK41_02630) - 560898..562484 (+) 1587 WP_210390278.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76014.16 Da        Isoelectric Point: 4.7432

>NTDB_id=529239 JLK41_RS02615 WP_210390276.1 557097..559208(+) (pilQ) [Pseudomonas khazarica strain ODT-83]
MNGSLSRLSVAFMAALLSPAILAANLQGLDVASLPGDRVELKLSFDEPVTAPRGYTIEQPARIALDLPGVSNKLGSKNRE
LGVGNARSVTIVEAKDRTRLIVNLTSLAPYSTRVDGNDLFVVVGDSAAAPRPAAAPVAASPAPAKKTYGPQAKAISNIDF
QRGEQGEGNVVITLSDKSVAPDIQEQGGKIRLDFVKTELPESLRVRLDVKDFATPVQFVNATGSSDKASIVIEPVGFYDY
LAYQTENKLTLSVKPLTQEDVERRNADRFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAGNITLRLQNVPWD
QALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKATDMAKLFQSVTSADGAADD
RGSVTVDDRTNSIIAYQTQERLDELRRIIAQLDIPVRQVMIEARIVEANVDYNKALGVRWGGSVRNGRWDVSGKDGVQAF
DEDTGQRIFLGTDKVGSTTLDDGLANLPFVDMGVANSTSGIAIGYLGSSVVLDLQLSAMEATGNGEVISQPKVVTSDKET
AKILKGQEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPNFQAAINGVPPINKNEVNAKVLVNDG
ETIVIGGVFENTQTRSTEKVPFLGDLPFIGRVFRRDIVQDEKAELLVFITPRIMNNNSIAVNR

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=529239 JLK41_RS02615 WP_210390276.1 557097..559208(+) (pilQ) [Pseudomonas khazarica strain ODT-83]
ATGAACGGCTCTCTTTCGCGTCTTAGTGTCGCCTTCATGGCAGCGCTGCTGTCGCCTGCAATCCTGGCGGCCAATCTGCA
AGGTCTGGACGTGGCCAGCCTGCCCGGGGACCGGGTCGAGCTGAAACTGTCTTTCGATGAGCCGGTGACGGCGCCGCGTG
GCTACACCATCGAACAGCCGGCGCGCATTGCTCTGGATCTTCCAGGTGTATCGAACAAGCTTGGCTCCAAGAACCGGGAA
CTGGGTGTCGGCAATGCGCGTAGCGTCACCATCGTCGAAGCCAAGGACCGCACGCGCCTGATCGTCAATCTGACCAGCCT
GGCGCCGTATAGCACGCGTGTCGACGGCAACGACCTGTTCGTCGTTGTCGGTGACTCCGCCGCTGCTCCGCGTCCGGCTG
CTGCGCCCGTCGCGGCGAGTCCCGCTCCAGCGAAGAAGACCTATGGTCCGCAGGCGAAAGCGATCAGCAATATCGACTTT
CAGCGTGGTGAGCAGGGTGAAGGTAACGTTGTCATTACTCTTTCCGACAAGTCCGTAGCGCCTGACATCCAGGAGCAGGG
CGGCAAGATCCGGCTCGACTTCGTCAAGACCGAGCTGCCTGAATCCTTGCGTGTGCGTCTGGATGTGAAGGACTTTGCGA
CTCCAGTCCAGTTCGTGAACGCTACCGGCAGTTCCGACAAGGCGAGCATCGTTATCGAGCCGGTAGGCTTTTACGATTAC
CTCGCCTATCAGACCGAGAACAAGCTGACCCTCAGCGTCAAGCCACTGACCCAGGAAGATGTCGAGCGTCGCAATGCAGA
TCGTTTCGCCTACACGGGCGAGAAGCTGTCGCTGAACTTCCAGGATATCGACGTGCGCTCCGTGCTGCAGTTGATCGCTG
ACTTCACCGATCTGAACCTGGTGGCCAGTGACACTGTCGCGGGCAATATCACTCTGCGTCTGCAGAACGTGCCGTGGGAC
CAGGCGCTGGACCTGGTGCTCAAAACCAAGGGCCTGGACAAACGCAAGGTGGGTAATGTGCTGCTGGTGGCACCGGCCGA
CGAGATCGCTGCCCGTGAGCGCCAGGAACTGGAGTCGCAGAAACAGATCGCCGAACTCGCCCCGCTGCGTCGTGAGCTGA
TCCAGGTGAACTATGCCAAGGCAACTGACATGGCCAAGCTGTTTCAGTCGGTGACCAGTGCCGATGGTGCGGCCGATGAC
CGTGGTTCGGTCACGGTGGACGATCGCACCAACAGCATCATTGCCTATCAGACCCAGGAGCGCCTGGACGAGCTGCGCCG
CATCATTGCCCAGCTGGATATCCCGGTACGCCAGGTGATGATCGAAGCGCGAATCGTCGAAGCCAATGTCGATTACAACA
AAGCACTTGGCGTTCGCTGGGGGGGTAGTGTGCGCAATGGCCGTTGGGATGTGAGTGGCAAGGACGGCGTGCAGGCGTTC
GATGAAGATACCGGTCAGCGTATCTTCCTTGGGACGGACAAAGTTGGTAGTACGACTCTTGATGACGGTCTGGCGAACCT
TCCGTTCGTCGATATGGGGGTCGCCAACAGCACCTCAGGTATCGCTATCGGATACCTGGGCAGCAGCGTGGTACTGGATC
TGCAGCTCTCTGCGATGGAGGCGACCGGCAATGGTGAGGTTATCTCCCAGCCCAAGGTCGTGACCTCCGACAAGGAAACT
GCGAAGATCCTGAAGGGTCAGGAAGTACCGTATCAGGAGGCCAGTTCGAGTGGCGCGACCAGCACCTCCTTCAAGGAAGC
TGCTCTGTCGCTGGAGGTGACGCCGCAGATCACGCCGGACAACCGCATCATCATGGAAGTCAAGGTGACCAAGGACGCCC
CGAACTTCCAGGCTGCGATCAACGGCGTTCCGCCGATCAACAAGAACGAGGTCAATGCCAAGGTGCTGGTCAATGATGGT
GAAACCATCGTGATCGGTGGGGTATTCGAGAATACCCAGACCAGATCGACCGAGAAGGTGCCTTTCTTGGGCGATCTGCC
GTTCATCGGCCGCGTGTTCCGTCGCGATATCGTGCAGGACGAGAAGGCTGAGTTGCTGGTTTTCATCACTCCGCGCATCA
TGAACAACAATTCTATTGCCGTGAATCGATGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(373-438)

AMIN domain (AMIN)

(38-122)

Secretin and TonB N terminus short domain (STN)

(299-345)

Bacterial type II and III secretion system protein (Secretin)

(538-694)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.79

100

0.76
  comQ Acinetobacter baylyi ADP1

43.165

98.862

0.427
  pilQ Acinetobacter baumannii strain A118

40.405

100

0.425
  pilQ Acinetobacter baumannii D1279779

40.405

100

0.425
  pilQ Legionella pneumophila strain ERS1305867

37.722

96.159

0.363
  pilQ Legionella pneumophila strain Lp02

37.722

96.159

0.363