Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JLK41_RS02595 Genome accession   NZ_CP068551
Coordinates   554264..555328 (+) Length   354 a.a.
NCBI ID   WP_037049850.1    Uniprot ID   -
Organism   Pseudomonas khazarica strain ODT-83     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 549264..560328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLK41_RS02585 (JLK41_02585) - 550318..551586 (+) 1269 WP_037049853.1 malic enzyme-like NAD(P)-binding protein -
  JLK41_RS02590 (JLK41_02590) - 551671..554082 (-) 2412 WP_179553254.1 penicillin-binding protein 1A -
  JLK41_RS02595 (JLK41_02595) comM 554264..555328 (+) 1065 WP_037049850.1 pilus assembly protein PilM Machinery gene
  JLK41_RS02600 (JLK41_02600) pilN 555328..555900 (+) 573 WP_047590037.1 type 4a pilus biogenesis protein PilN -
  JLK41_RS02605 (JLK41_02605) pilO 555897..556517 (+) 621 WP_210390274.1 type 4a pilus biogenesis protein PilO -
  JLK41_RS02610 (JLK41_02610) pilP 556517..557041 (+) 525 WP_210390275.1 pilus assembly protein PilP -
  JLK41_RS02615 (JLK41_02615) pilQ 557097..559208 (+) 2112 WP_210390276.1 type IV pilus secretin PilQ Machinery gene
  JLK41_RS02620 (JLK41_02620) aroK 559214..559732 (+) 519 WP_080757073.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37827.22 Da        Isoelectric Point: 4.4688

>NTDB_id=529238 JLK41_RS02595 WP_037049850.1 554264..555328(+) (comM) [Pseudomonas khazarica strain ODT-83]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGSRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVLAKAKTGVKTAAV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRNPERVEVLLAACRKENVEVREAALAL
AGVTAKVVDVEAYALERAYGLLEAQLGGGHDELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGKQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKEAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=529238 JLK41_RS02595 WP_037049850.1 554264..555328(+) (comM) [Pseudomonas khazarica strain ODT-83]
GTGCTAGGGCTCTTCACTAAGAAAGCGAATACGCTGCTGGGGATCGATATCAGCTCGACTTCGGTCAAGCTCCTCGAACT
GAGTCGCTCGGGAAGCCGCTACAAGGTAGAGGCTTACGCAGTCGAGCCACTCCCGCCGAACGCAGTAGTTGAAAAGAACA
TCGCCGAGCTGGAGGGGGTCGGTCAGGCGCTCTCGCGCGTGTTGGCCAAGGCCAAGACCGGCGTCAAGACCGCGGCCGTC
GCCGTCGCGGGATCGGCAGTCATCACCAAGACCATCGAGATGGAAGCGGGTCTTTCCGAGGACGAGCTGGAAAACCAGCT
GAAGATCGAAGCCGATCAGTACATTCCTTATCCGCTCGAAGAAGTCGCGATCGATTTCGAAGTGCAGGGTCCTGCGCCGC
GTAACCCGGAGCGGGTCGAAGTCCTGCTCGCGGCATGCCGCAAGGAGAATGTCGAGGTGCGCGAGGCGGCACTGGCGCTG
GCTGGTGTGACCGCCAAGGTGGTCGATGTCGAAGCCTATGCGCTCGAGCGTGCCTACGGCCTGCTGGAGGCGCAGCTCGG
TGGTGGTCATGACGAACTGACGGTCGCCGTGGTCGACATCGGTGCGACCATGACCACGCTCAGCGTGTTGCACAACGGGC
GCACCATCTATACCCGCGAGCAGCTCTTCGGTGGCAAGCAGCTGACCGAGGAAATTCAGCGTCGCTATGGTCTGTCGGTG
GAGGAAGCTGGTCTTGCCAAGAAGCAGGGCGGTCTTCCGGATGACTATGACAGCGAGGTCTTGCAGCCGTTCAAGGAAGC
GGTGGTTCAGCAAGTTTCGCGTTCGCTGCAGTTTTTCTTCGCTGCCGGCCAGTTCAACGATGTGGACTACATCCTCCTGG
CAGGCGGTACCGCGTCCATTCCGGATCTCGACCGGCTGATTCAGCAGAAGATCGGTACGCAGACGCTGGTGGCCAATCCC
TTTGCCGATATGGCGCTCAGCAGCAAGGTCAACGCCGGTGCGCTGGCCAGTGATGCGCCGGCACTGATGATTGCCTGTGG
CCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

53.39

100

0.534
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449