Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JKK45_RS02405 Genome accession   NZ_CP068226
Coordinates   534722..535990 (-) Length   422 a.a.
NCBI ID   WP_096142091.1    Uniprot ID   -
Organism   Shewanella algae strain A291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529722..540990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK45_RS02380 (JKK45_02380) mutT 531729..532127 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  JKK45_RS02385 (JKK45_02385) yacG 532127..532339 (-) 213 WP_208124109.1 DNA gyrase inhibitor YacG -
  JKK45_RS02390 (JKK45_02390) zapD 532384..533124 (-) 741 WP_028779562.1 cell division protein ZapD -
  JKK45_RS02395 (JKK45_02395) coaE 533121..533732 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  JKK45_RS02400 (JKK45_02400) pilD 533733..534647 (-) 915 WP_096142092.1 prepilin peptidase Machinery gene
  JKK45_RS02405 (JKK45_02405) pilC 534722..535990 (-) 1269 WP_096142091.1 type II secretion system F family protein Machinery gene
  JKK45_RS02410 (JKK45_02410) pilB 536148..537854 (-) 1707 WP_096142090.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK45_RS22055 - 537923..538264 (-) 342 WP_096142089.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JKK45_RS02420 (JKK45_02420) nadC 539123..539983 (-) 861 WP_096142088.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JKK45_RS02425 (JKK45_02425) ampD 540142..540720 (+) 579 WP_186265262.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45985.16 Da        Isoelectric Point: 10.2044

>NTDB_id=528213 JKK45_RS02405 WP_096142091.1 534722..535990(-) (pilC) [Shewanella algae strain A291]
MATATATAKSNKSKNKNAKAQPKIHTFTWKGQNRDGKLSSGELRGTSITEIKTLLKSQGINPKTVRKKSTSLLGGDKKIK
AMDIAMFTRQIATMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYKEKAEALKSKIKKAMFYPAAVVVVAVAVTALLLLFVVPQFEEIFSSFGAELPAFTQLIINISRGLQST
WYIFLAVIVISIWLFVRAHRNSEHFRNRIDEMVLKIPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFNLGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=528213 JKK45_RS02405 WP_096142091.1 534722..535990(-) (pilC) [Shewanella algae strain A291]
ATGGCCACCGCAACGGCGACAGCAAAAAGCAATAAAAGCAAGAACAAAAACGCTAAAGCCCAACCCAAGATCCATACCTT
TACCTGGAAGGGGCAAAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGTATCACAGAGATAAAAACCC
TGCTTAAGAGCCAGGGAATAAATCCCAAGACGGTACGTAAAAAATCAACATCTCTTTTAGGAGGTGATAAAAAGATAAAA
GCGATGGATATCGCGATGTTCACCCGTCAGATAGCCACTATGCTGGCTGCCGGGGTACCGCTGGTTACTTCCATCGAGCT
GATCGCCCGCGGCCATGAAAAAAACAAGGTGCGGGTACTGCTTGGTACTGTATTGGCCGATGTCCAGGCCGGCATCCCGC
TGTCTGATGCCCTCCGCCCGCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAACACTCAGGC
TCTCTGGACGCCGTATTCGACCGTATCGCCACTTATAAGGAAAAAGCCGAAGCCCTTAAATCAAAAATCAAGAAAGCCAT
GTTCTACCCAGCTGCGGTAGTTGTCGTTGCTGTCGCTGTAACTGCTTTATTACTTTTATTTGTAGTTCCTCAGTTTGAAG
AAATATTCAGCAGCTTTGGTGCCGAACTGCCAGCATTTACTCAACTAATTATTAACATTAGTCGAGGACTGCAAAGTACT
TGGTATATATTTCTTGCAGTAATAGTTATAAGCATTTGGCTGTTTGTCCGTGCTCACCGCAACTCAGAGCACTTTCGTAA
CCGTATCGATGAAATGGTATTGAAGATTCCTTTAATCGGAGAAATTCTCCATAAAGGTGCCATGGCCCGTTTTGCCCGCA
CTCTGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTC
TACCGCAAGGCGCTGTTGAATGTGCGCACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCT
ATTCCCTGATATGCTAATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAGATTGCCA
ATATCTACGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCTATTATGATGGTAGTTATCGGC
ACCCTGGTAGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTAGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.89

94.55

0.528
  pilC Acinetobacter baylyi ADP1

49.754

96.209

0.479
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Acinetobacter baumannii D1279779

48.039

96.682

0.464
  pilC Vibrio cholerae strain A1552

45.885

95.024

0.436
  pilC Vibrio campbellii strain DS40M4

44.913

95.498

0.429
  pilG Neisseria meningitidis 44/76-A

42.75

94.787

0.405
  pilG Neisseria gonorrhoeae MS11

42.75

94.787

0.405