Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6I52_RS02420 Genome accession   NZ_CP068180
Coordinates   530899..533031 (+) Length   710 a.a.
NCBI ID   WP_010588590.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525899..538031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS02400 (I6I52_02400) pilM 527906..528964 (+) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene
  I6I52_RS02405 (I6I52_02405) pilN 528964..529602 (+) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  I6I52_RS02410 (I6I52_02410) pilO 529599..530312 (+) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I52_RS02415 (I6I52_02415) pilP 530312..530836 (+) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  I6I52_RS02420 (I6I52_02420) pilQ 530899..533031 (+) 2133 WP_010588590.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I52_RS02425 (I6I52_02425) aroK 533068..533610 (+) 543 WP_004991750.1 shikimate kinase AroK -
  I6I52_RS02430 (I6I52_02430) aroB 533643..534725 (+) 1083 WP_004991748.1 3-dehydroquinate synthase -
  I6I52_RS02435 (I6I52_02435) - 534739..535599 (+) 861 WP_004991747.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 76797.20 Da        Isoelectric Point: 5.1468

>NTDB_id=527845 I6I52_RS02420 WP_010588590.1 530899..533031(+) (pilQ) [Acinetobacter ursingii strain FDAARGOS_1095]
MNHTVRQFSMGAVAFAIMQVASAQVSITNIVPMNIAGQGTEIRVMFNGLPPQPQAYQMEQPSRLILDFDKAQLGLKQNTI
AVATNEASSVDVVSDAKRSRLTVNLKDAGAFTTRVEGNTFILKINSAQQVMTPAAVAMPAATNIQQGVSNIGFQRGSQGE
GQVVIDLLGSNTPVDVQQQGSKIVVRMLGNKIPTNLARRLNVNDFATPVASVDAYNEGGNGVIVVQSAGSYEYMAYQAEN
KLTLSLKRPVDRNQLGARSTPNYSGKKISLDFQDIEVRRVLQLLADFTDINMVTADSVQGNITLRLKDVPWDQALDIILK
TKNLDKRRSGNVIWIAPVTELTKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLMTQGKNSSSSGSSNSGGSEPL
GDSVGSLLSPRGTVSIDPRTNTLIINDTAQKIDQIRKMIDLLDVRVKQVMVEARIVRASTSFTKEMGVKWGVLSQGITKN
NDLLVGGSETTLWNLRDPDDDGKYTIERPDNLNVDLGVTSAGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVM
TADKQTAKVATGQEVPYQSTTNSASGSTATTSFKEALLSLEVTPSITPDGKIQMLLDISKDSIAGEAPNGELILNKNTIN
TNVLVDNGETVILGGVFEQTTTNQQTKVPFLGDLPWVGRLFRKDSKKDDKQELLIFVTPRIVNDTQVRNQ

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=527845 I6I52_RS02420 WP_010588590.1 530899..533031(+) (pilQ) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGAATCATACAGTTCGACAGTTTTCAATGGGTGCGGTTGCATTTGCAATCATGCAAGTGGCTAGTGCGCAGGTCAGTAT
TACCAATATTGTGCCCATGAATATCGCAGGACAGGGGACAGAAATCCGTGTGATGTTCAATGGTTTGCCACCGCAACCAC
AAGCATATCAAATGGAACAGCCATCCAGACTGATTTTGGATTTTGATAAGGCTCAGCTGGGTCTTAAACAAAATACTATT
GCTGTCGCGACCAATGAAGCCAGCAGTGTCGATGTAGTATCTGATGCGAAGCGTTCACGTTTAACCGTAAATTTAAAAGA
TGCTGGAGCATTTACTACACGTGTTGAAGGCAATACTTTTATTTTAAAGATTAATAGTGCCCAACAAGTAATGACTCCTG
CCGCTGTTGCTATGCCAGCGGCAACGAATATTCAGCAAGGGGTTTCTAATATTGGTTTTCAGCGCGGCTCGCAGGGCGAA
GGTCAAGTGGTTATCGATTTGCTTGGCAGTAATACGCCTGTCGATGTACAGCAACAAGGCAGTAAAATTGTTGTACGCAT
GCTTGGCAATAAAATTCCGACCAATTTAGCGCGACGTTTAAATGTCAATGATTTTGCTACGCCAGTTGCGAGTGTGGATG
CCTATAATGAAGGCGGCAATGGGGTAATCGTGGTGCAATCTGCTGGTAGCTATGAATATATGGCATATCAGGCAGAAAAT
AAGCTGACTTTAAGCCTTAAACGTCCAGTGGATCGTAATCAGTTAGGCGCACGTTCTACGCCAAATTATAGTGGTAAAAA
AATCTCTCTAGATTTCCAGGATATTGAAGTGCGTCGTGTACTTCAGTTATTGGCAGATTTTACTGATATCAACATGGTGA
CGGCAGATTCAGTACAGGGCAATATTACTCTACGCTTAAAGGATGTGCCGTGGGATCAGGCGTTAGATATTATTTTAAAA
ACTAAAAATCTGGATAAACGCCGTAGCGGTAATGTGATCTGGATCGCGCCAGTTACTGAATTAACCAAAGCTGAAGAAGA
AGAAGCCAAAGCGATTGCGCAAAGTGTCAAACTTGCGCCTTTACAAACTGAGTATATTCAACTCAGTTATGCGAAAGCCG
CCGATATTGAAAAATTGATGACTCAAGGTAAAAACAGCTCAAGTTCAGGTTCATCAAATTCAGGTGGTTCAGAGCCGTTA
GGTGATAGTGTTGGTAGTTTGCTGAGTCCAAGAGGAACTGTGTCGATTGATCCACGAACCAATACTTTAATCATTAATGA
TACTGCACAGAAAATTGATCAGATTCGTAAAATGATTGATTTATTGGATGTGCGTGTTAAGCAGGTGATGGTGGAGGCGC
GGATTGTGCGAGCAAGCACTTCATTTACCAAAGAAATGGGGGTGAAGTGGGGTGTTCTTTCACAGGGGATTACCAAAAAT
AATGATTTGTTGGTCGGTGGTAGTGAAACTACTTTATGGAATCTGCGTGATCCTGATGACGATGGTAAATACACCATCGA
ACGCCCAGATAACCTGAATGTAGATTTAGGTGTCACTTCAGCGGGTGCGAGTAAAATTGCCTTTGGCTTAATTAGTTTGT
CTGACTTTATGCTGGATTTGGAATTATCTGCATTACAAGCAGATGGTTATGGTGAAGTGATTTCAACACCAAAAGTCATG
ACTGCTGATAAACAAACCGCCAAAGTTGCAACGGGTCAGGAAGTGCCTTATCAGTCCACCACAAACTCTGCTTCGGGTTC
AACGGCAACCACTTCATTTAAAGAAGCTTTACTCAGCCTTGAAGTCACACCAAGTATTACACCTGATGGTAAAATCCAGA
TGCTGTTGGATATTTCCAAAGATTCGATCGCTGGAGAAGCGCCGAATGGTGAGTTGATTCTAAATAAAAACACGATTAAT
ACCAATGTGTTGGTCGATAATGGTGAAACGGTGATTCTGGGTGGGGTATTTGAACAGACTACAACCAATCAACAGACGAA
AGTGCCGTTCTTGGGAGACTTACCTTGGGTGGGACGTTTATTTAGAAAAGACTCTAAAAAGGACGATAAACAAGAGTTGT
TGATCTTCGTTACCCCGAGAATTGTTAATGACACTCAGGTGAGAAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(364-448)

AMIN domain (AMIN)

(38-121)

Secretin and TonB N terminus short domain (STN)

(294-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

80.992

100

0.828
  pilQ Acinetobacter baumannii strain A118

80.854

100

0.827
  comQ Acinetobacter baylyi ADP1

79.354

100

0.796
  pilQ Pseudomonas aeruginosa PAK

41.054

100

0.417