Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6I52_RS02415 Genome accession   NZ_CP068180
Coordinates   530312..530836 (+) Length   174 a.a.
NCBI ID   WP_004991753.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525312..535836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS02400 (I6I52_02400) pilM 527906..528964 (+) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene
  I6I52_RS02405 (I6I52_02405) pilN 528964..529602 (+) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  I6I52_RS02410 (I6I52_02410) pilO 529599..530312 (+) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I52_RS02415 (I6I52_02415) pilP 530312..530836 (+) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  I6I52_RS02420 (I6I52_02420) pilQ 530899..533031 (+) 2133 WP_010588590.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I52_RS02425 (I6I52_02425) aroK 533068..533610 (+) 543 WP_004991750.1 shikimate kinase AroK -
  I6I52_RS02430 (I6I52_02430) aroB 533643..534725 (+) 1083 WP_004991748.1 3-dehydroquinate synthase -
  I6I52_RS02435 (I6I52_02435) - 534739..535599 (+) 861 WP_004991747.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19069.24 Da        Isoelectric Point: 8.2498

>NTDB_id=527844 I6I52_RS02415 WP_004991753.1 530312..530836(+) (pilP) [Acinetobacter ursingii strain FDAARGOS_1095]
MKKHSIFMAIVCCGLVGCDSRIDAVNEQMAAIRNQPPLPIEPAPVFTPVPSFTYSAMQLKSPFLPSSLAAELKIMAGKRV
YPNFNRQPQPLESYALESLNMKGSMRSQNGKILALIQTPDGQVERVQVGSYMGMNQGRIVGISPTQIDLVEIVPDGRDGY
VERPRTLVLIGPEP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=527844 I6I52_RS02415 WP_004991753.1 530312..530836(+) (pilP) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGAAAAAACATAGTATTTTCATGGCAATCGTATGTTGTGGTTTGGTTGGTTGTGATTCACGTATTGACGCTGTAAATGA
ACAAATGGCAGCCATTCGTAATCAGCCACCTTTGCCGATTGAGCCAGCACCTGTTTTCACGCCTGTGCCGAGTTTTACCT
ATTCAGCCATGCAGTTGAAAAGCCCATTTTTACCTAGCTCTTTGGCAGCTGAACTCAAAATTATGGCAGGTAAACGGGTT
TATCCGAACTTTAATCGTCAGCCGCAACCACTTGAAAGCTACGCACTCGAATCTTTAAATATGAAAGGCAGTATGCGTAG
CCAAAATGGAAAGATTCTTGCATTAATTCAGACGCCTGATGGGCAAGTTGAGCGGGTTCAGGTTGGAAGCTATATGGGAA
TGAATCAAGGGCGAATTGTCGGAATCAGTCCGACACAAATTGATTTGGTTGAAATTGTACCAGATGGTCGAGATGGTTAT
GTTGAGCGTCCGCGTACCTTGGTTCTGATTGGGCCTGAGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.571

100

0.81
  comL Acinetobacter baylyi ADP1

72.414

100

0.724