Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6I52_RS02410 Genome accession   NZ_CP068180
Coordinates   529599..530312 (+) Length   237 a.a.
NCBI ID   WP_004991755.1    Uniprot ID   N9DJW9
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524599..535312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS02395 (I6I52_02395) ponA 525178..527742 (-) 2565 WP_004991760.1 penicillin-binding protein PBP1a -
  I6I52_RS02400 (I6I52_02400) pilM 527906..528964 (+) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene
  I6I52_RS02405 (I6I52_02405) pilN 528964..529602 (+) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  I6I52_RS02410 (I6I52_02410) pilO 529599..530312 (+) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I52_RS02415 (I6I52_02415) pilP 530312..530836 (+) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  I6I52_RS02420 (I6I52_02420) pilQ 530899..533031 (+) 2133 WP_010588590.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I52_RS02425 (I6I52_02425) aroK 533068..533610 (+) 543 WP_004991750.1 shikimate kinase AroK -
  I6I52_RS02430 (I6I52_02430) aroB 533643..534725 (+) 1083 WP_004991748.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26691.45 Da        Isoelectric Point: 4.9910

>NTDB_id=527843 I6I52_RS02410 WP_004991755.1 529599..530312(+) (pilO) [Acinetobacter ursingii strain FDAARGOS_1095]
MSRDEFNELDPEVAAPKKKKLTLDKFLQQFNTLDMNNYGGWPLSVKITCWIFIFFAVCALGYFLAIKPKLDAISTAQAQE
QNLLNEFREKDSKLRNLQQYQVQLQEMESNFNQQLAQLPKETEIPSLVEDINMTGVNSGLKFKNIRLENEVRQEFFIEQP
ISIDATGDYHAFGAFVSAIAALPRIVTLHDFVIEGKQVKEKADIPEISYSVKAKTYRYIGADDQASGASAPVAAGAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=527843 I6I52_RS02410 WP_004991755.1 529599..530312(+) (pilO) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGAGTCGTGATGAATTCAATGAACTAGATCCTGAAGTTGCTGCACCAAAGAAAAAGAAATTGACCTTAGATAAATTTCT
TCAGCAGTTTAATACGCTGGATATGAATAACTACGGGGGATGGCCACTCTCAGTTAAGATTACCTGCTGGATTTTTATTT
TCTTCGCCGTCTGTGCTTTGGGCTATTTTTTAGCCATTAAGCCTAAACTGGATGCGATCTCAACAGCTCAGGCACAAGAG
CAGAATTTGCTCAACGAGTTTCGTGAAAAGGATTCAAAATTACGTAACTTGCAGCAATATCAGGTTCAGTTGCAGGAAAT
GGAATCGAATTTTAACCAGCAATTGGCGCAACTTCCAAAAGAAACAGAAATTCCAAGTCTGGTTGAAGATATCAATATGA
CAGGGGTAAATTCTGGACTTAAATTTAAAAATATCCGTCTTGAAAATGAAGTTAGACAAGAGTTCTTTATTGAACAGCCG
ATCTCGATTGATGCGACTGGGGATTATCATGCCTTTGGTGCATTTGTAAGCGCAATTGCGGCATTGCCTCGTATTGTAAC
TTTGCATGATTTTGTGATTGAAGGTAAACAGGTTAAAGAAAAAGCAGATATTCCTGAAATTAGTTATTCCGTGAAAGCAA
AAACCTATCGATATATAGGTGCGGATGATCAGGCGAGTGGTGCTTCTGCTCCAGTTGCAGCGGGGGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9DJW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

75.527

100

0.755
  comO Acinetobacter baylyi ADP1

76.087

97.046

0.738