Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6I53_RS03680 Genome accession   NZ_CP068176
Coordinates   665271..667403 (-) Length   710 a.a.
NCBI ID   WP_125624944.1    Uniprot ID   A0A7T9UL47
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 660271..672403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS03665 (I6I53_03670) - 662703..663563 (-) 861 WP_004994366.1 hypothetical protein -
  I6I53_RS03670 (I6I53_03675) aroB 663577..664659 (-) 1083 WP_004994367.1 3-dehydroquinate synthase -
  I6I53_RS03675 (I6I53_03680) aroK 664692..665234 (-) 543 WP_004994368.1 shikimate kinase AroK -
  I6I53_RS03680 (I6I53_03685) pilQ 665271..667403 (-) 2133 WP_125624944.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I53_RS03685 (I6I53_03690) pilP 667466..667990 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  I6I53_RS03690 (I6I53_03695) pilO 667990..668703 (-) 714 WP_004994371.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I53_RS03695 (I6I53_03700) pilN 668700..669338 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  I6I53_RS03700 (I6I53_03705) pilM 669338..670396 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 76799.19 Da        Isoelectric Point: 5.0626

>NTDB_id=527810 I6I53_RS03680 WP_125624944.1 665271..667403(-) (pilQ) [Acinetobacter ursingii strain FDAARGOS_1096]
MNHTVRQFSMGAVAFAIMQVASAQVSITNIVPMNIAGQGTEIRVMFNGLPPQPQAYQMEQPSRLILDFDKAQLGLKQNTI
AVATNEASSVDVMSDAQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQQVMTPAAVAMPAATNIQQGVSNIGFQRGSQGE
GQVVIDLLGSNTPVDVQQQGSKIVVRMLGNKIPTNLARRLNVNDFATPVASVDAYNEGGNGVIVVQSAGSYEYMAYQAEN
KLTLSLKRPVDRNQLGARSTPNYSGKKISLDFQDIEVRRVLQLLADFTDINMVTADSVQGNITLRLKDVPWDQALDIILK
TKNLDKRRSGNVIWIAPVTELTKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLMTQGKNSSSSGSSNSGGSEPL
GDSVGSLLSPRGTVSIDPRTNTLIINDTAQKIDQIRKMIDLLDVRVKQVMVEARIVRASTSFTKEMGVKWGVLSQGITKN
NDLLVGGSETTLWNLRDPDDDGKYTIERPDNLNVDLGVTSAGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVM
TADKQTAKVATGQEVPYQSTTNSAAGSTATTSFKEALLSLEVTPSITPDGKIQMLLDISKDSIGGEAPNGELILNKNTIN
TNVLVDNGETVILGGVFEQTTTNQQTKVPFLGDLPWVGRLFRKDSKKDDKQELLIFVTPRIVNDTQVRNQ

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=527810 I6I53_RS03680 WP_125624944.1 665271..667403(-) (pilQ) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGAATCATACAGTTCGACAGTTTTCAATGGGTGCGGTTGCATTTGCAATCATGCAAGTGGCTAGTGCGCAGGTCAGTAT
TACCAATATTGTGCCCATGAATATCGCAGGACAGGGGACAGAAATCCGTGTGATGTTCAATGGTTTGCCACCGCAACCAC
AAGCATATCAAATGGAACAGCCATCTAGACTGATTTTGGATTTTGATAAGGCTCAGCTGGGTCTTAAACAAAATACTATT
GCGGTCGCAACCAACGAAGCCAGCAGTGTCGATGTCATGTCTGATGCACAGCGTTCGCGTCTAACGGTCAATTTAAAAGA
TGCGGGTGCATTTACCACTCGTGTTGAAGGCAATACTTTTATTTTAAAGATTAATAGTGCCCAACAAGTAATGACTCCTG
CCGCTGTTGCTATGCCAGCGGCAACGAATATTCAGCAAGGGGTTTCTAATATTGGTTTTCAGCGCGGCTCGCAGGGCGAA
GGTCAGGTTGTTATCGATTTGCTTGGCAGTAATACGCCTGTCGATGTACAACAACAAGGCAGTAAAATTGTTGTGCGTAT
GCTAGGAAATAAAATTCCAACCAATTTAGCGCGACGTTTAAATGTCAATGATTTTGCTACGCCAGTTGCGAGTGTGGATG
CCTATAATGAAGGCGGCAATGGGGTAATCGTGGTGCAATCTGCTGGTAGCTATGAATATATGGCATATCAGGCAGAAAAT
AAACTGACTTTAAGCCTTAAACGTCCAGTGGATCGTAATCAGTTAGGCGCACGTTCTACGCCAAATTATAGTGGTAAAAA
AATCTCTCTAGATTTCCAGGATATTGAAGTGCGTCGTGTACTTCAGTTATTGGCAGATTTTACTGATATCAATATGGTGA
CGGCAGATTCAGTACAGGGCAATATTACTCTACGTTTAAAGGATGTACCGTGGGATCAGGCGTTAGATATTATTTTAAAA
ACTAAAAATCTGGATAAACGCCGTAGCGGTAATGTGATCTGGATTGCGCCTGTTACTGAATTAACCAAAGCTGAAGAAGA
AGAAGCCAAAGCGATTGCGCAAAGCGTCAAGCTTGCGCCATTACAAACTGAATATATTCAACTCAGTTATGCTAAGGCGG
CAGATATTGAAAAATTGATGACCCAAGGTAAAAACAGCTCAAGTTCAGGTTCATCAAATTCAGGTGGTTCAGAGCCGCTA
GGTGATAGTGTTGGTAGTTTGCTGAGTCCAAGAGGAACTGTGTCGATTGATCCACGAACCAATACTTTAATCATTAATGA
TACTGCACAGAAAATTGATCAGATTCGTAAAATGATTGATTTATTGGATGTGCGTGTTAAGCAGGTGATGGTGGAGGCGC
GGATTGTGAGAGCAAGCACCTCGTTTACCAAAGAAATGGGCGTAAAATGGGGTGTCCTTTCACAGGGCATTACTAAAAAT
AATGATTTATTGGTTGGTGGTAGTGAAACCACTTTATGGAATTTACGTGATCCTGATGACGATGGTAAATACACCATCGA
ACGACCAGATAACCTGAATGTAGATTTAGGTGTCACTTCAGCGGGTGCGAGTAAAATTGCCTTTGGCTTAATTAGTTTGT
CTGACTTTATGCTGGATTTGGAATTATCTGCATTACAAGCAGATGGTTATGGTGAAGTGATTTCAACGCCAAAAGTCATG
ACTGCCGATAAACAAACTGCCAAAGTTGCAACGGGGCAGGAAGTACCTTATCAGTCCACCACAAACTCTGCGGCGGGTTC
CACTGCAACCACTTCATTTAAAGAAGCTTTACTCAGCCTTGAAGTCACACCAAGTATTACACCTGATGGTAAAATCCAGA
TGCTATTGGATATCTCCAAAGACTCTATTGGTGGAGAAGCACCGAATGGTGAATTGATCTTGAATAAAAACACCATTAAT
ACCAATGTGTTGGTTGATAATGGTGAAACGGTGATTCTGGGTGGGGTATTTGAACAGACTACAACCAATCAACAGACAAA
AGTGCCGTTCTTGGGAGACTTACCTTGGGTGGGACGTTTATTTAGAAAAGACTCTAAAAAGGACGATAAACAAGAGTTGT
TGATCTTCGTTACCCCGAGAATTGTTAATGACACTCAGGTGAGAAATCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(294-337)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(364-448)

AMIN domain (AMIN)

(38-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

81.129

100

0.83
  pilQ Acinetobacter baumannii strain A118

80.992

100

0.828
  comQ Acinetobacter baylyi ADP1

79.354

100

0.796
  pilQ Pseudomonas aeruginosa PAK

40.915

100

0.415