Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6I53_RS03685 Genome accession   NZ_CP068176
Coordinates   667466..667990 (-) Length   174 a.a.
NCBI ID   WP_004991753.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662466..672990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS03665 (I6I53_03670) - 662703..663563 (-) 861 WP_004994366.1 hypothetical protein -
  I6I53_RS03670 (I6I53_03675) aroB 663577..664659 (-) 1083 WP_004994367.1 3-dehydroquinate synthase -
  I6I53_RS03675 (I6I53_03680) aroK 664692..665234 (-) 543 WP_004994368.1 shikimate kinase AroK -
  I6I53_RS03680 (I6I53_03685) pilQ 665271..667403 (-) 2133 WP_125624944.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I53_RS03685 (I6I53_03690) pilP 667466..667990 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  I6I53_RS03690 (I6I53_03695) pilO 667990..668703 (-) 714 WP_004994371.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I53_RS03695 (I6I53_03700) pilN 668700..669338 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  I6I53_RS03700 (I6I53_03705) pilM 669338..670396 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19069.24 Da        Isoelectric Point: 8.2498

>NTDB_id=527811 I6I53_RS03685 WP_004991753.1 667466..667990(-) (pilP) [Acinetobacter ursingii strain FDAARGOS_1096]
MKKHSIFMAIVCCGLVGCDSRIDAVNEQMAAIRNQPPLPIEPAPVFTPVPSFTYSAMQLKSPFLPSSLAAELKIMAGKRV
YPNFNRQPQPLESYALESLNMKGSMRSQNGKILALIQTPDGQVERVQVGSYMGMNQGRIVGISPTQIDLVEIVPDGRDGY
VERPRTLVLIGPEP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=527811 I6I53_RS03685 WP_004991753.1 667466..667990(-) (pilP) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGAAAAAACATAGTATTTTCATGGCAATCGTATGTTGTGGTTTGGTTGGTTGTGATTCACGTATTGACGCTGTAAATGA
ACAAATGGCAGCCATTCGTAATCAGCCACCTTTGCCGATTGAGCCAGCACCTGTTTTCACGCCTGTGCCGAGTTTTACCT
ATTCAGCCATGCAGTTGAAAAGCCCATTTTTACCTAGCTCTTTGGCAGCTGAACTCAAAATTATGGCAGGTAAACGGGTT
TATCCTAACTTTAATCGTCAGCCGCAACCACTTGAAAGCTACGCACTCGAATCTTTAAATATGAAAGGCAGTATGCGTAG
CCAAAATGGAAAGATTCTTGCATTAATTCAGACACCTGATGGGCAAGTTGAGCGGGTTCAGGTTGGAAGCTATATGGGAA
TGAATCAAGGGCGAATTGTCGGAATCAGTCCGACACAAATTGATTTGGTTGAAATTGTACCAGATGGTCGAGATGGTTAT
GTTGAGCGTCCGCGTACCTTGGTTCTGATTGGGCCTGAGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.571

100

0.81
  comL Acinetobacter baylyi ADP1

72.414

100

0.724