Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6I53_RS03690 Genome accession   NZ_CP068176
Coordinates   667990..668703 (-) Length   237 a.a.
NCBI ID   WP_004994371.1    Uniprot ID   A0A7T9UJH3
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662990..673703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS03670 (I6I53_03675) aroB 663577..664659 (-) 1083 WP_004994367.1 3-dehydroquinate synthase -
  I6I53_RS03675 (I6I53_03680) aroK 664692..665234 (-) 543 WP_004994368.1 shikimate kinase AroK -
  I6I53_RS03680 (I6I53_03685) pilQ 665271..667403 (-) 2133 WP_125624944.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I53_RS03685 (I6I53_03690) pilP 667466..667990 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  I6I53_RS03690 (I6I53_03695) pilO 667990..668703 (-) 714 WP_004994371.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I53_RS03695 (I6I53_03700) pilN 668700..669338 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  I6I53_RS03700 (I6I53_03705) pilM 669338..670396 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene
  I6I53_RS03705 (I6I53_03710) ponA 670560..673124 (+) 2565 WP_004991760.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26677.46 Da        Isoelectric Point: 4.9910

>NTDB_id=527812 I6I53_RS03690 WP_004994371.1 667990..668703(-) (pilO) [Acinetobacter ursingii strain FDAARGOS_1096]
MSRDEFNELDPEVAAPKKKKLTLDKFLQQFNTLDMNNYGGWPLSVKITCWIFIFFAVCALGYFLAIKPKLDAISTAQAQE
QNLLNEFREKDSKLRNLQQYQVQLQEMESNFNQQLAQLPKETEIPSLVEDINMTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIDATGDYHAFGAFVSAIAALPRIVTLHDFVIEGKQVKEKADIPEISYSLKAKTYRYIGADDQASGASAPVAAGAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=527812 I6I53_RS03690 WP_004994371.1 667990..668703(-) (pilO) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGAGTCGTGATGAATTCAATGAACTAGATCCTGAAGTTGCTGCACCAAAGAAAAAGAAATTGACCTTAGATAAATTTCT
TCAGCAGTTTAATACGCTGGATATGAATAACTACGGGGGATGGCCACTCTCAGTTAAGATTACCTGCTGGATTTTTATTT
TCTTCGCCGTCTGTGCTTTGGGCTATTTTTTAGCCATTAAGCCTAAACTGGATGCGATCTCAACAGCTCAGGCACAAGAG
CAGAATTTGCTCAACGAGTTTCGTGAAAAGGATTCAAAATTACGTAACTTGCAGCAATATCAGGTTCAATTGCAGGAAAT
GGAATCGAATTTTAACCAGCAATTGGCACAACTTCCAAAAGAAACAGAAATTCCAAGTCTGGTTGAAGATATCAATATGA
CAGGGGTAAATTCTGGACTTAAATTTAAAAATATTCGTCTGGAAAATGAAGTTAAACAAGAATTCTTTATTGAGCAGCCG
ATCTCGATTGACGCGACTGGGGATTATCATGCCTTTGGTGCATTTGTGAGTGCTATTGCAGCACTACCACGTATTGTGAC
TTTGCATGATTTTGTTATTGAAGGAAAGCAGGTTAAAGAAAAAGCAGATATTCCTGAAATTAGTTATTCCTTGAAAGCAA
AAACCTATCGATATATAGGTGCGGATGATCAGGCGAGTGGTGCTTCTGCTCCAGTTGCAGCGGGGGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

75.949

100

0.759
  comO Acinetobacter baylyi ADP1

76.087

97.046

0.738