Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6I72_RS12440 Genome accession   NZ_CP068158
Coordinates   2666801..2667280 (+) Length   159 a.a.
NCBI ID   WP_005528999.1    Uniprot ID   A0AAQ1Z7P4
Organism   Corynebacterium striatum strain FDAARGOS_1115     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2661801..2672280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I72_RS12425 (I6I72_12425) - 2664631..2665749 (+) 1119 WP_049063452.1 TerC family protein -
  I6I72_RS12430 (I6I72_12430) - 2665858..2666151 (-) 294 WP_046645309.1 YciI family protein -
  I6I72_RS12435 (I6I72_12435) pgsA 2666199..2666801 (+) 603 WP_172453515.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I72_RS12440 (I6I72_12440) cinA 2666801..2667280 (+) 480 WP_005528999.1 nicotinamide-nucleotide amidohydrolase family protein Machinery gene
  I6I72_RS12445 (I6I72_12445) - 2667325..2667696 (+) 372 WP_034656969.1 helix-turn-helix domain-containing protein -
  I6I72_RS12450 (I6I72_12450) - 2667838..2668698 (+) 861 WP_005529001.1 PspA/IM30 family protein -
  I6I72_RS12455 (I6I72_12455) - 2668850..2669464 (-) 615 WP_070508992.1 energy-coupling factor transporter transmembrane protein EcfT -
  I6I72_RS12460 (I6I72_12460) - 2669540..2670232 (-) 693 WP_070508991.1 energy-coupling factor ABC transporter ATP-binding protein -
  I6I72_RS12465 (I6I72_12465) - 2670238..2670828 (-) 591 WP_046645313.1 biotin transporter BioY -
  I6I72_RS12470 (I6I72_12470) - 2670975..2671190 (+) 216 WP_049145047.1 DUF3046 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16313.39 Da        Isoelectric Point: 4.5177

>NTDB_id=527695 I6I72_RS12440 WP_005528999.1 2666801..2667280(+) (cinA) [Corynebacterium striatum strain FDAARGOS_1115]
MDSLASQVVETLKRRRETVAFCESLTAGLAAATVATVPGASAVLRGGLVTYATEVKSHFLHVPLEQLEERGVVSASTAQE
MAVAAARETGADWAVSLTGVAGPDTQEGKPAGTVFVGIVGPSVEPTAIQTEHLSGSRDEIRTGAVAAALSLLLSTLEEN

Nucleotide


Download         Length: 480 bp        

>NTDB_id=527695 I6I72_RS12440 WP_005528999.1 2666801..2667280(+) (cinA) [Corynebacterium striatum strain FDAARGOS_1115]
ATGGATTCTCTGGCCAGCCAAGTAGTTGAAACGCTCAAGCGGCGCCGGGAAACTGTGGCGTTTTGCGAGTCTCTGACTGC
TGGCCTAGCCGCGGCCACCGTGGCCACCGTGCCCGGCGCCTCTGCAGTGTTGCGCGGGGGATTGGTTACCTACGCAACCG
AGGTAAAGTCCCATTTCTTGCACGTTCCTCTGGAGCAGCTGGAGGAACGGGGCGTGGTTTCCGCGTCGACGGCGCAGGAG
ATGGCCGTGGCTGCCGCCCGTGAGACTGGCGCGGATTGGGCGGTCTCGCTAACTGGTGTCGCAGGCCCTGATACTCAGGA
GGGCAAACCCGCGGGCACGGTATTCGTAGGGATTGTGGGTCCCAGCGTTGAACCAACGGCGATTCAGACGGAGCACCTTT
CTGGCTCGCGCGACGAGATTCGAACGGGTGCTGTAGCCGCAGCATTGAGCCTGCTTCTATCAACTTTGGAAGAAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(2-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.677

97.484

0.484
  cinA Streptococcus pneumoniae TIGR4

49.677

97.484

0.484
  cinA Streptococcus pneumoniae Rx1

49.677

97.484

0.484
  cinA Streptococcus pneumoniae R6

49.677

97.484

0.484
  cinA Streptococcus pneumoniae D39

49.677

97.484

0.484
  cinA Streptococcus mitis NCTC 12261

49.677

97.484

0.484
  cinA Streptococcus mutans UA159

45.806

97.484

0.447
  cinA Bacillus subtilis subsp. subtilis str. 168

36.943

98.742

0.365