Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6I73_RS00045 Genome accession   NZ_CP068157
Coordinates   10254..10733 (+) Length   159 a.a.
NCBI ID   WP_100087101.1    Uniprot ID   -
Organism   Corynebacterium striatum strain FDAARGOS_1116     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5254..15733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I73_RS00030 (I6I73_00030) - 8084..9202 (+) 1119 WP_100087098.1 TerC family protein -
  I6I73_RS00035 (I6I73_00035) - 9311..9604 (-) 294 WP_100087099.1 YciI family protein -
  I6I73_RS00040 (I6I73_00040) pgsA 9652..10254 (+) 603 WP_168926538.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I73_RS00045 (I6I73_00045) cinA 10254..10733 (+) 480 WP_100087101.1 nicotinamide-nucleotide amidohydrolase family protein Machinery gene
  I6I73_RS00050 (I6I73_00050) - 10778..11149 (+) 372 WP_049063448.1 helix-turn-helix domain-containing protein -
  I6I73_RS00055 (I6I73_00055) - 11291..12151 (+) 861 WP_100087102.1 PspA/IM30 family protein -
  I6I73_RS00060 (I6I73_00060) - 12303..12917 (-) 615 WP_100087103.1 energy-coupling factor transporter transmembrane protein EcfT -
  I6I73_RS00065 (I6I73_00065) - 12993..13685 (-) 693 WP_201816811.1 energy-coupling factor ABC transporter ATP-binding protein -
  I6I73_RS00070 (I6I73_00070) - 13691..14281 (-) 591 WP_046645313.1 biotin transporter BioY -
  I6I73_RS00075 (I6I73_00075) - 14428..14643 (+) 216 WP_046645314.1 DUF3046 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16365.51 Da        Isoelectric Point: 4.5177

>NTDB_id=527685 I6I73_RS00045 WP_100087101.1 10254..10733(+) (cinA) [Corynebacterium striatum strain FDAARGOS_1116]
MDSLASQVVETLKRRRETVAFCESLTAGLAAATVATVPGASAVLRGGLVTYATEVKSHFLHVPLEQLEERGVVSAPTAQE
MAVAAARETGADWAISLTGVAGPDTQEGKPAGTVFVGIVGPSVEPTAIQTEHLSGSRDEIRTGAVAVALSLLLSTLEEN

Nucleotide


Download         Length: 480 bp        

>NTDB_id=527685 I6I73_RS00045 WP_100087101.1 10254..10733(+) (cinA) [Corynebacterium striatum strain FDAARGOS_1116]
ATGGATTCCCTGGCTAGCCAAGTAGTTGAAACGCTCAAGCGGCGCCGGGAAACCGTGGCGTTTTGCGAGTCTCTGACTGC
TGGCCTAGCCGCGGCAACCGTGGCCACCGTGCCCGGCGCCTCTGCCGTGTTGCGCGGGGGATTGGTTACCTACGCAACCG
AGGTAAAGTCCCATTTCTTGCACGTTCCTCTGGAGCAGCTGGAGGAACGGGGCGTGGTTTCCGCGCCGACGGCGCAGGAG
ATGGCCGTGGCTGCCGCCCGTGAGACTGGCGCGGATTGGGCGATCTCGTTAACTGGTGTCGCAGGCCCTGATACTCAGGA
GGGCAAACCCGCGGGCACGGTATTCGTAGGGATTGTGGGCCCCAGCGTTGAACCAACGGCGATTCAGACGGAGCACCTTT
CTGGCTCGCGCGACGAGATTCGAACGGGTGCTGTAGCCGTAGCATTGAGCCTGCTTCTATCAACTTTGGAAGAAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(2-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.323

97.484

0.491
  cinA Streptococcus pneumoniae TIGR4

50.323

97.484

0.491
  cinA Streptococcus pneumoniae Rx1

50.323

97.484

0.491
  cinA Streptococcus pneumoniae R6

50.323

97.484

0.491
  cinA Streptococcus pneumoniae D39

50.323

97.484

0.491
  cinA Streptococcus mitis NCTC 12261

49.677

97.484

0.484
  cinA Streptococcus mutans UA159

46.452

97.484

0.453
  cinA Bacillus subtilis subsp. subtilis str. 168

37.58

98.742

0.371