Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   K6973_RS00810 Genome accession   NZ_CP082206
Coordinates   131372..131617 (+) Length   81 a.a.
NCBI ID   WP_242002881.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126372..136617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS00785 (K6973_00785) - 128255..128620 (+) 366 WP_218655016.1 DUF1033 family protein -
  K6973_RS00790 (K6973_00790) comGA 128725..129666 (+) 942 WP_138124405.1 competence type IV pilus ATPase ComGA Machinery gene
  K6973_RS00795 (K6973_00795) comGB 129602..130633 (+) 1032 WP_138126921.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6973_RS00800 (K6973_00800) comGC 130635..130961 (+) 327 WP_138124408.1 competence type IV pilus major pilin ComGC Machinery gene
  K6973_RS00805 (K6973_00805) comGD 130936..131364 (+) 429 WP_256867133.1 competence type IV pilus minor pilin ComGD Machinery gene
  K6973_RS00810 (K6973_00810) comGE 131372..131617 (+) 246 WP_242002881.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6973_RS00815 (K6973_00815) comGF 131598..132038 (+) 441 WP_138124417.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6973_RS00820 (K6973_00820) comGG 132067..132390 (+) 324 WP_256867134.1 competence type IV pilus minor pilin ComGG -
  K6973_RS00825 (K6973_00825) comGH 132453..133406 (+) 954 WP_138124423.1 class I SAM-dependent methyltransferase Machinery gene
  K6973_RS00830 (K6973_00830) - 133465..134661 (+) 1197 WP_084916957.1 acetate kinase -
  K6973_RS00835 (K6973_00835) - 134967..135173 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  K6973_RS00840 (K6973_00840) - 135276..135956 (+) 681 WP_218655018.1 type II CAAX endopeptidase family protein -
  K6973_RS00845 (K6973_00845) - 135974..136411 (+) 438 WP_012766452.1 hypothetical protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9250.81 Da        Isoelectric Point: 10.1569

>NTDB_id=527414 K6973_RS00810 WP_242002881.1 131372..131617(+) (comGE) [Streptococcus dysgalactiae strain DY107]
MATGLLVTIVILVLTSLKQSQTRLTYYRNQQEKLNLALMAVQTGQASLNMNDCRLTVSRTEKTLIVRDQEGEVIRIEKKD
R

Nucleotide


Download         Length: 246 bp        

>NTDB_id=527414 K6973_RS00810 WP_242002881.1 131372..131617(+) (comGE) [Streptococcus dysgalactiae strain DY107]
ATGGCAACAGGCCTCCTCGTGACTATTGTCATACTGGTTCTAACGAGTTTGAAGCAAAGTCAGACAAGGTTGACATATTA
TCGCAACCAACAAGAAAAGCTCAACCTAGCTCTGATGGCAGTACAAACTGGTCAAGCGTCTCTCAATATGAATGATTGTC
GTCTGACGGTTTCACGCACAGAAAAAACACTTATCGTTAGGGATCAGGAAGGAGAGGTTATTAGAATTGAAAAAAAGGAC
AGGTAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(2-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.038

97.531

0.42
  comGE Streptococcus mutans UA159

43.038

97.531

0.42