Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6J14_RS06435 Genome accession   NZ_CP068057
Coordinates   1278541..1280511 (-) Length   656 a.a.
NCBI ID   WP_115246683.1    Uniprot ID   A0A380JY97
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273541..1285511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS06415 (I6J14_06415) amiF 1274052..1274975 (-) 924 WP_003049689.1 ATP-binding cassette domain-containing protein Regulator
  I6J14_RS06420 (I6J14_06420) amiE 1274968..1276038 (-) 1071 WP_003049688.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS06425 (I6J14_06425) amiD 1276047..1276973 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6J14_RS06430 (I6J14_06430) amiC 1276973..1278475 (-) 1503 WP_003049686.1 ABC transporter permease Regulator
  I6J14_RS06435 (I6J14_06435) amiA 1278541..1280511 (-) 1971 WP_115246683.1 peptide ABC transporter substrate-binding protein Regulator
  I6J14_RS06440 (I6J14_06440) pbp3 1280840..1282078 (+) 1239 WP_115252605.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I6J14_RS06445 (I6J14_06445) - 1282224..1283129 (-) 906 Protein_1279 DDE-type integrase/transposase/recombinase -
  I6J14_RS06450 (I6J14_06450) - 1283316..1284497 (+) 1182 WP_115252604.1 serine hydrolase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72076.39 Da        Isoelectric Point: 5.0017

>NTDB_id=526733 I6J14_RS06435 WP_115246683.1 1278541..1280511(-) (amiA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDAKSEALYVVEDSIKNLKAYQNGEVDFKEV
GIKALDEKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGLESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMQDGYIRHLSWNLNRTSFNNTKK
DAAQQEDGKKALNNKDFRQAIQFGFDRGSFQAQTVGEDAKTKALRNMLVPPTFVTIGKNDFGSEVEKEIAKLGDEWKNIN
LADAQDGLYNPEKAKVEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
SQGFYAKTPEQQDYDIIASWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDIVAAAGLDTYQTLLDEAAAITDDN
DARYTAYAKAQAYLLDDAVDIPVVSTGGSPRVSKVVPFSGAFAWAGAKGSLSYKGMKLQDKPVTTKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=526733 I6J14_RS06435 WP_115246683.1 1278541..1280511(-) (amiA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAGAAAAGTAGATGGTTAGCAACTTTAGGTGTTGCTGTATTATCAGTATCCGTTTTAGCAGCCTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTAGATGGTCTTTTGGAAAATGACGAGTATGGTAACTTGGTA
CCATCGCTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGACTTTGTAACTGGTCTAAAACATGCGGTTGATGCTAAAT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTTGATTTCAAAGAAGTC
GGTATTAAAGCGCTTGATGAAAAAACGGTTCAATACACTTTAAACAAACCTGAAAGTTACTGGAATTCGAAAACAACATA
TAGTGTACTTTTCCCAGTTAATGCGAAATTCTTGAAGTCAAAAGGTAAAGATTTTGGAACAACTGACCCATCATCAATCC
TTGTTAACGGAGCTTATTTCTTAAGTGCCTTCACTTCAAAATCATCCATGGAATTTCATAAAAATGAAAATTACTGGGAT
GCTAAGAATGTTGGACTAGAATCTGTTAAATTGACTTACTCAGACGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGATCCAACTTATAAATCAGCTAAGAAAAATTACGCTGATAACA
TTACTTACGGTATGCAAGACGGTTATATTCGTCACTTATCTTGGAATTTAAATCGTACATCATTTAACAATACTAAAAAA
GATGCAGCTCAACAGGAGGATGGCAAAAAAGCCCTTAATAACAAAGACTTCCGTCAAGCTATCCAATTTGGATTTGATCG
TGGTTCGTTCCAAGCTCAGACAGTCGGTGAAGATGCTAAAACAAAAGCTCTACGTAATATGCTAGTTCCACCAACATTTG
TGACTATTGGAAAAAATGACTTTGGTTCAGAAGTTGAAAAGGAAATTGCAAAACTTGGCGATGAATGGAAAAACATCAAC
TTAGCTGACGCTCAAGATGGTCTCTACAATCCAGAAAAGGCTAAAGTTGAGTTTGCTAAAGCCAAAGAAGCTCTGACAGC
TGAAGGAGTAACCTTCCCGGTTCAATTAGATTATCCTGTTGACCAAGCAAACGCAGCAACTGTTCAAGAGGCACAATCCT
TTAAACAATCTGTCGAAGCATCACTTGGTAAAGAAAACGTTGTTGTTAACGTTCTTGAAACAGAGACCTCTACTCATGAG
TCTCAAGGTTTCTACGCGAAAACACCAGAGCAGCAAGACTATGATATTATTGCATCGTGGTGGGGACCAGACTACCAAGA
TCCACGTACCTACCTTGATATTATGAGTCCAGTAGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAGGATATTGTAGCAGCTGCAGGTCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAT
GATGCTCGTTACACAGCTTACGCGAAAGCTCAAGCTTACTTGTTAGATGATGCTGTTGATATTCCTGTTGTATCTACAGG
TGGTTCACCACGTGTATCTAAAGTTGTACCTTTTAGTGGTGCCTTTGCATGGGCGGGGGCTAAAGGTTCGCTCTCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGACAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JY97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.378

100

0.508
  amiA3 Streptococcus thermophilus LMG 18311

49.849

100

0.503
  amiA3 Streptococcus thermophilus LMD-9

49.245

100

0.497