Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6J14_RS06425 Genome accession   NZ_CP068057
Coordinates   1276047..1276973 (-) Length   308 a.a.
NCBI ID   WP_003049687.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271047..1281973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS06415 (I6J14_06415) amiF 1274052..1274975 (-) 924 WP_003049689.1 ATP-binding cassette domain-containing protein Regulator
  I6J14_RS06420 (I6J14_06420) amiE 1274968..1276038 (-) 1071 WP_003049688.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS06425 (I6J14_06425) amiD 1276047..1276973 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6J14_RS06430 (I6J14_06430) amiC 1276973..1278475 (-) 1503 WP_003049686.1 ABC transporter permease Regulator
  I6J14_RS06435 (I6J14_06435) amiA 1278541..1280511 (-) 1971 WP_115246683.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.93 Da        Isoelectric Point: 9.2024

>NTDB_id=526731 I6J14_RS06425 WP_003049687.1 1276047..1276973(-) (amiD) [Streptococcus dysgalactiae strain FDAARGOS_1157]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=526731 I6J14_RS06425 WP_003049687.1 1276047..1276973(-) (amiD) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTAACAATCT
TATTGATGAGTTTCATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAATGGACAATCTTTGTTTGATGGTGTCTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATCATCATTGTT
TTGACCTATTCATTAGGGGCTGGTTTTTGGAATTTAATTTTAGCTTTCTGTATTACTGGATGGATCGGTGTAGCTTATTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAAAACCTCTTACCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACAACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTCACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCTAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731