Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6J14_RS06415 Genome accession   NZ_CP068057
Coordinates   1274052..1274975 (-) Length   307 a.a.
NCBI ID   WP_003049689.1    Uniprot ID   A0A380JXD4
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269052..1279975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS06415 (I6J14_06415) amiF 1274052..1274975 (-) 924 WP_003049689.1 ATP-binding cassette domain-containing protein Regulator
  I6J14_RS06420 (I6J14_06420) amiE 1274968..1276038 (-) 1071 WP_003049688.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS06425 (I6J14_06425) amiD 1276047..1276973 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6J14_RS06430 (I6J14_06430) amiC 1276973..1278475 (-) 1503 WP_003049686.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34768.92 Da        Isoelectric Point: 6.4058

>NTDB_id=526729 I6J14_RS06415 WP_003049689.1 1274052..1274975(-) (amiF) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRKKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=526729 I6J14_RS06415 WP_003049689.1 1274052..1274975(-) (amiF) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACCTTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGTGACATCCTTTATGATGGAAAAGTTATCAATCGAAAAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAGATGATTTTCCAAGATCCTGCAGCTAGTTTGAATGAGCGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACCCGCTATCCTCACGAATTTTCAGGAGGCCAACGTCAGCGGATTGGT
ATCGCGAGAGCCCTGGTGATGAATCCCGAATTTGTCATTGCTGATGAGCCTATATCCGCTCTAGATGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCAGAAAAAGGACTCACTTACCTTTTCATTGCCCACGACCTATCAGTTG
TTCGCTTCATTTCAGATCGTATTGCGGTTATCCATAAAGGAGTTATTGTGGAGGTTGCCGAAACAGAAGAATTATTTAAT
AATCCCATCCACCCTTACACAAAATCTCTTTTATCAGCTGTTCCTATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAATCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAACCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JXD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.759

100

0.818
  amiF Streptococcus thermophilus LMD-9

81.433

100

0.814
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814