Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I6J14_RS06420 Genome accession   NZ_CP068057
Coordinates   1274968..1276038 (-) Length   356 a.a.
NCBI ID   WP_003049688.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269968..1281038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS06415 (I6J14_06415) amiF 1274052..1274975 (-) 924 WP_003049689.1 ATP-binding cassette domain-containing protein Regulator
  I6J14_RS06420 (I6J14_06420) amiE 1274968..1276038 (-) 1071 WP_003049688.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS06425 (I6J14_06425) amiD 1276047..1276973 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6J14_RS06430 (I6J14_06430) amiC 1276973..1278475 (-) 1503 WP_003049686.1 ABC transporter permease Regulator
  I6J14_RS06435 (I6J14_06435) amiA 1278541..1280511 (-) 1971 WP_115246683.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39623.62 Da        Isoelectric Point: 5.6648

>NTDB_id=526730 I6J14_RS06420 WP_003049688.1 1274968..1276038(-) (amiE) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPSVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=526730 I6J14_RS06420 WP_003049688.1 1274968..1276038(-) (amiE) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAAGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCTAACGGCTCAATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGACCCGATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATCACAGAGGTCATTATCAAACATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGACGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCGTTAGCTTGTCGCCCAGATATCCTGATTTGTGATGAGCCAAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTCCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGATAAGGTTGCTGTCATGTATGCTGGTGAAATTGTTGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGTTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTATTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCGTTTGCGC
TTCGCTCAGAATATGCGATGGTTTTGGATTTTGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAAGCGCCAAAAGTTCAGAAACCATCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.222

100

0.781
  amiE Streptococcus thermophilus LMG 18311

76.111

100

0.77
  amiE Streptococcus thermophilus LMD-9

76.111

100

0.77
  oppD Streptococcus mutans UA159

57.27

94.663

0.542