Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6J14_RS06430 Genome accession   NZ_CP068057
Coordinates   1276973..1278475 (-) Length   500 a.a.
NCBI ID   WP_003049686.1    Uniprot ID   A0A380JY44
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271973..1283475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS06415 (I6J14_06415) amiF 1274052..1274975 (-) 924 WP_003049689.1 ATP-binding cassette domain-containing protein Regulator
  I6J14_RS06420 (I6J14_06420) amiE 1274968..1276038 (-) 1071 WP_003049688.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS06425 (I6J14_06425) amiD 1276047..1276973 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  I6J14_RS06430 (I6J14_06430) amiC 1276973..1278475 (-) 1503 WP_003049686.1 ABC transporter permease Regulator
  I6J14_RS06435 (I6J14_06435) amiA 1278541..1280511 (-) 1971 WP_115246683.1 peptide ABC transporter substrate-binding protein Regulator
  I6J14_RS06440 (I6J14_06440) pbp3 1280840..1282078 (+) 1239 WP_115252605.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I6J14_RS06445 (I6J14_06445) - 1282224..1283129 (-) 906 Protein_1279 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55970.36 Da        Isoelectric Point: 10.1806

>NTDB_id=526732 I6J14_RS06430 WP_003049686.1 1276973..1278475(-) (amiC) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDHAS
KVDSSVTTEATSANKVIYEKYIDTLGNGWQLKRFPVSKKFYATRQIPIYERVWNFFSNLVVIDHPWKIQDKDNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYVNGKFPFLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDITFPTGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAIIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYKDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=526732 I6J14_RS06430 WP_003049686.1 1276973..1278475(-) (amiC) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCATTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAGCAAGACCCTAACTACAATAAGATGACGACGACGCCAGATAAAAAGG
CTGCTTACGAAAGTTTAACCTTCCAACGTATGGGTTATATTAATTACTTTTCAAGTAAAGAGTTAAAAGATCATGCTTCT
AAAGTAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAAGTTATTTATGAGAAATATATTGATACCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTCAGATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAACTTAGTTGTTATCGACCATCCTTGGAAGATTCAAGACAAGGATAACCCTAACCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCCCTTGTTGGGTCAGGAACACAACACAAATACCTTGTCTATGTCAATGG
TAAGTTCCCTTTCCTTCATCAAAACCTTGTCACACTAAACTTAGGAACATCTTATCCAACTTATAGTAACATTCCTGTTC
TGCAGGTTATTTCCCAAGGTCAAGGACGAACAGCACTTCAAGATATCACTTTCCCAACAGGTGTGACTAAAAAATCATCG
GTAGATATTTATAGTCGTACTTATAAAAACCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAAGGTGATTC
TTATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTCAAAAATACTTACTTTGATCGCTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCTATTATCTATGTGGTCCGTTTCTTAGGAAGTATGGTTGGTTTGCC
AGATAGTTTCCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGTTACCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGGTCAAAAGGG
TTATCAGAATCTGAAATTTATAAAGACCACCTTTTCAAAAATGCTATGGTTCCTATTGTATCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCAACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCTATGATTGTTGGGCTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JY44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

60

100

0.6
  amiC Streptococcus thermophilus LMG 18311

60

100

0.6