Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JJQ97_RS02065 Genome accession   NZ_CP068034
Coordinates   449661..451766 (+) Length   701 a.a.
NCBI ID   WP_201419119.1    Uniprot ID   -
Organism   Pseudomonas syringae strain BIM B-268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444661..456766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ97_RS02045 (JJQ97_01690) pilM 446830..447894 (+) 1065 WP_003414236.1 type IV pilus assembly protein PilM Machinery gene
  JJQ97_RS02050 (JJQ97_01695) - 447894..448469 (+) 576 WP_201419117.1 PilN domain-containing protein -
  JJQ97_RS02055 (JJQ97_01700) pilO 448466..449089 (+) 624 WP_017278462.1 type 4a pilus biogenesis protein PilO -
  JJQ97_RS02060 (JJQ97_01705) pilP 449086..449613 (+) 528 WP_201419118.1 type 4a pilus biogenesis lipoprotein PilP -
  JJQ97_RS02065 (JJQ97_01710) pilQ 449661..451766 (+) 2106 WP_201419119.1 type IV pilus secretin PilQ Machinery gene
  JJQ97_RS02070 (JJQ97_01715) aroK 451771..452289 (+) 519 WP_024684306.1 shikimate kinase AroK -
  JJQ97_RS02075 (JJQ97_01720) aroB 452405..453508 (+) 1104 WP_201419120.1 3-dehydroquinate synthase -
  JJQ97_RS02080 (JJQ97_01725) - 453519..455135 (+) 1617 WP_201419121.1 AAA family ATPase -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 75482.90 Da        Isoelectric Point: 5.1826

>NTDB_id=526441 JJQ97_RS02065 WP_201419119.1 449661..451766(+) (pilQ) [Pseudomonas syringae strain BIM B-268]
MTRILSIIGVSLCIAMLSPVLQAANLKTLDVAALPGDRIELKLAFDAPVPAPRGYTTSQPARIALDLPGVTSQLATKSRD
LGSGNARSVVVVQAQDRTRVIINLTTLSPYSSRVDGNNLFVVIGQGAGAAQASQPTTAMGAQRVAVPPPTPASARPFIPA
GVKAIRNVDFQRGELGEGNVVIDLSNPSIAPDIQEQGGKIRVDFAKTQLPEPLRVRLDVKDFATPVQFVSASASGDKASI
LIEPSGAFDYSAFQTENKLTISVRPLTNEDVDRRAADKPVYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGI
TLRLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKLFQS
VTSAESKADERGSITVDDRTNNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNR
KWTTYGLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAK
ILKGTEIPYQESSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGET
IVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRIMNNQAISVSR

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=526441 JJQ97_RS02065 WP_201419119.1 449661..451766(+) (pilQ) [Pseudomonas syringae strain BIM B-268]
ATGACCCGGATTCTCTCGATTATCGGCGTGTCGTTATGCATCGCGATGCTGTCGCCGGTTCTCCAGGCTGCCAACCTCAA
GACCCTGGATGTCGCCGCCCTGCCGGGTGACCGCATCGAGCTGAAGCTGGCATTCGACGCCCCGGTGCCCGCACCGCGCG
GTTACACCACGTCGCAACCGGCGCGCATTGCGCTGGACCTGCCGGGTGTTACCAGCCAGCTGGCGACCAAAAGTCGAGAC
CTGGGCAGCGGCAATGCGCGCAGTGTGGTCGTGGTACAGGCTCAGGACCGCACCCGGGTGATCATCAACCTGACCACGCT
TTCGCCGTACAGCTCCCGCGTCGATGGCAACAACCTGTTCGTGGTCATCGGCCAGGGTGCCGGCGCCGCGCAAGCCTCCC
AGCCGACCACTGCGATGGGTGCGCAACGGGTCGCGGTGCCACCGCCCACACCGGCATCCGCCAGACCGTTCATCCCTGCT
GGCGTCAAGGCCATCCGGAATGTCGACTTCCAGCGTGGCGAGCTGGGTGAAGGCAATGTGGTCATCGACCTGAGCAACCC
GAGCATTGCCCCGGATATTCAGGAGCAGGGCGGCAAGATCCGCGTGGACTTCGCCAAGACCCAGTTGCCCGAACCGCTGC
GCGTCCGCCTGGACGTCAAGGACTTCGCCACGCCGGTGCAGTTCGTCAGTGCTTCGGCGTCGGGCGACAAGGCCAGCATT
CTGATCGAGCCGTCGGGCGCCTTCGACTACTCGGCGTTCCAGACCGAAAACAAGCTGACGATCAGCGTGCGTCCATTGAC
CAACGAGGATGTCGACCGCCGCGCCGCCGACAAGCCGGTGTACACCGGTGAAAAGCTGTCGCTGAACTTCCAGGACATCG
ACGTGCGTTCGGTGCTGCAGCTGATTGCCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTCCAGGGCGGTATC
ACCCTGCGTCTGCAGAATGTGCCATGGGATCAGGCGCTGGACCTGGTGCTGAAAACCAAGGGGCTGGACAAGCGCAAGGT
CGGCAACGTGCTGCTGGTTGCGCCAGCCGATGAAATTGCCGCCCGCGAGCGTCAGGAGCTGGAGTCGCTCAAGCAGATCG
CCGAACTGGCGCCCCTGCGCCGTGAGCTGCTGCAGGTCAATTACGCCAAGGCAGCCGACATCGCCAAGCTGTTCCAGTCC
GTGACCAGTGCCGAGTCCAAGGCCGACGAGCGCGGCTCGATCACGGTGGACGACCGGACCAACAACATCATTGCCTACCA
GACCCAGGAACGACTCGACGAGCTGCGTCGTATCGTTTCGCAGCTGGATATCCCGGTACGCCAGGTGATGATCGAGGCGC
GCATCGTCGAGGCCAACGTCGATTACAACAAGCAGCTCGGGGTTCGCTGGGGCGGCTCTACCAACACCAGCGGCAACAGA
AAGTGGACAACCTACGGGCTTGACAATAATGGCGACGAGGCCGGTAACACCAGCGGCAACCTGACCCCCAACGTGCCGTT
CGTGGACCTGGGCGCAGCCGGCGCCACCTCGGGTATCGGCCTTGGCTTCGTGACCAACAACACGCTGCTGGACCTTGAGC
TGAGTGCCATGGAGAAAACCGGCAACGGTGAAATCGTCTCCCAGCCCAAGGTGGTCACTTCCGACAAGGAAACCGCCAAG
ATCCTCAAGGGTACGGAGATCCCTTATCAGGAATCCAGCTCCAGCGGTGCGACCACCGTGAGCTTCAAAGAGGCTTCCCT
GTCGCTTGAAGTGACGCCGCAGATCACCCCGGACAATCGCATCATCATGGAAGTGAAGGTCACCAAGGACGAGCCGGACT
ACCTGAATGCGGTGCTGGGTGTGCCGCCGATCAAGAAGAACGAGGTCAACGCCAAAGTGCTGATTTCCGACGGCGAGACC
ATCGTCATCGGTGGTGTGTTCTCGAATACGCAAAGTAAAGTTGTCGATAAAGTGCCATTTCTTGGCGATGTACCGTATCT
TGGCCGGCTTTTCAGGCGCGATGTGGTATCTGAGTCCAAATCCGAGCTGTTGGTATTTCTGACTCCGCGTATCATGAACA
ACCAGGCGATTTCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(383-448)

Bacterial type II and III secretion system protein (Secretin)

(536-692)

Secretin and TonB N terminus short domain (STN)

(309-355)

AMIN domain (AMIN)

(38-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.917

100

0.749
  comQ Acinetobacter baylyi ADP1

41.917

99.715

0.418
  pilQ Acinetobacter baumannii strain A118

38.587

100

0.405
  pilQ Acinetobacter baumannii D1279779

38.587

100

0.405
  pilQ Legionella pneumophila strain ERS1305867

38.205

98.573

0.377
  pilQ Legionella pneumophila strain Lp02

38.171

98.288

0.375