Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JKJ11_RS14835 Genome accession   NZ_CP068024
Coordinates   3180425..3181651 (+) Length   408 a.a.
NCBI ID   WP_006074424.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175425..3186651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS14815 (JKJ11_14805) ampD 3176392..3176976 (-) 585 WP_006074431.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JKJ11_RS14820 (JKJ11_14810) nadC 3177112..3178002 (+) 891 WP_006074430.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JKJ11_RS14825 (JKJ11_14815) - 3178244..3178723 (+) 480 WP_006074427.1 pilin -
  JKJ11_RS14830 (JKJ11_14820) pilB 3178723..3180414 (+) 1692 WP_038222999.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKJ11_RS14835 (JKJ11_14825) pilC 3180425..3181651 (+) 1227 WP_006074424.1 type II secretion system F family protein Machinery gene
  JKJ11_RS14840 (JKJ11_14830) pilD 3181694..3182563 (+) 870 WP_124940291.1 A24 family peptidase Machinery gene
  JKJ11_RS14845 (JKJ11_14835) coaE 3182566..3183174 (+) 609 WP_252038393.1 dephospho-CoA kinase -
  JKJ11_RS14850 (JKJ11_14840) zapD 3183206..3183946 (+) 741 WP_006074420.1 cell division protein ZapD -
  JKJ11_RS14855 (JKJ11_14845) yacG 3183968..3184162 (+) 195 WP_006074419.1 DNA gyrase inhibitor YacG -
  JKJ11_RS14860 (JKJ11_14850) rplS 3184362..3184715 (-) 354 WP_006074418.1 50S ribosomal protein L19 -
  JKJ11_RS14865 (JKJ11_14855) trmD 3184758..3185507 (-) 750 WP_038224311.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JKJ11_RS14870 (JKJ11_14860) rimM 3185542..3186099 (-) 558 WP_031494889.1 ribosome maturation factor RimM -
  JKJ11_RS14875 (JKJ11_14865) rpsP 3186120..3186368 (-) 249 WP_031494887.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45105.11 Da        Isoelectric Point: 10.1763

>NTDB_id=526342 JKJ11_RS14835 WP_006074424.1 3180425..3181651(+) (pilC) [Vibrio sp. SCSIO 43133]
MPNPLPMPLRKFRWRGVDRSGAKAKGQILALTEMEVRNQLGRQQIHIRKISRHRISFWTRLTHKISRKDITLFTRQLATL
LTTRVPLVQALKLISESHSKAEMKSVLNQVASRVESGVPIAQALQALSTHFDRFYIDMIATGESSGNIAVTLDRLATYRE
KHDALQSKVVKAMIYPSMVLIVSCAVTYLMLTSVIPEFESMFKGFNANLPWFTSEVLELSNWSQSYGLVSVASLGLLIAS
IKFISLKNATAELYISKLAIKLPVVGDIITKATIAKFSRTLATSFSSGIPILTGIQASARTTENAYFQQAIFSIHTHVVA
GVPVHLAMRNSLAFPEMVLQMVMIGEETGKLDEMLNKIASIYEADVDNIVDNLGTIIEPLVIVFLGAIIGGLVIAMYLPI
FNLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=526342 JKJ11_RS14835 WP_006074424.1 3180425..3181651(+) (pilC) [Vibrio sp. SCSIO 43133]
ATGCCTAACCCGCTTCCTATGCCATTAAGAAAGTTCCGCTGGAGAGGTGTTGATCGATCTGGCGCAAAAGCAAAGGGGCA
AATCCTTGCTTTAACCGAAATGGAGGTCAGAAATCAATTAGGTCGGCAGCAAATCCATATCAGAAAAATTTCTCGCCATC
GCATTTCGTTTTGGACCAGATTAACCCACAAGATTTCACGCAAAGACATCACTCTATTCACTAGGCAATTGGCTACTTTG
CTGACGACAAGAGTTCCTCTTGTTCAAGCCCTTAAGCTTATCTCTGAAAGCCACTCCAAAGCCGAAATGAAATCGGTCCT
TAATCAGGTCGCTAGCCGAGTGGAGAGTGGCGTCCCTATCGCTCAAGCGCTACAAGCACTAAGTACACATTTTGACCGCT
TCTATATCGATATGATTGCGACGGGCGAATCGTCCGGAAACATTGCGGTGACGTTAGATAGGTTAGCAACATATCGTGAA
AAACATGATGCTCTGCAGTCTAAAGTCGTTAAAGCCATGATATATCCAAGTATGGTGCTGATAGTTTCTTGTGCCGTAAC
CTATTTGATGCTCACGAGTGTGATTCCTGAATTTGAATCGATGTTTAAAGGGTTCAATGCCAATTTACCTTGGTTCACAT
CCGAGGTGCTGGAGCTATCAAACTGGAGCCAATCATACGGACTGGTTAGCGTTGCTTCTCTAGGTTTATTGATTGCTAGC
ATTAAGTTTATTAGCCTTAAAAATGCTACTGCCGAATTATATATAAGTAAATTAGCCATCAAACTGCCCGTTGTTGGCGA
CATCATTACCAAAGCAACCATTGCCAAATTTAGCCGAACATTAGCGACCAGTTTTAGTTCTGGAATACCGATACTCACTG
GCATACAAGCGAGCGCAAGAACAACAGAGAACGCTTACTTTCAACAAGCTATTTTTTCTATACACACTCATGTCGTAGCG
GGCGTACCTGTTCATTTAGCAATGCGAAACAGTCTCGCTTTCCCTGAGATGGTGCTGCAAATGGTCATGATAGGTGAAGA
AACTGGCAAGTTAGATGAAATGCTCAATAAGATCGCTAGCATCTATGAGGCGGATGTCGATAACATCGTAGACAACTTAG
GAACAATCATCGAGCCTTTGGTTATTGTCTTCCTTGGTGCAATAATTGGCGGGTTAGTGATTGCAATGTACTTACCTATC
TTTAACTTAATGTCGGTAATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.721

98.529

0.549
  pilC Vibrio campbellii strain DS40M4

55.112

98.284

0.542
  pilC Acinetobacter baylyi ADP1

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

39.85

97.794

0.39
  pilC Pseudomonas stutzeri DSM 10701

39.447

97.549

0.385
  pilC Legionella pneumophila strain ERS1305867

37.811

98.529

0.373