Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K5P75_RS22245 Genome accession   NZ_CP082120
Coordinates   4616647..4617672 (+) Length   341 a.a.
NCBI ID   WP_000644897.1    Uniprot ID   B7LA31
Organism   Escherichia coli strain PC-NDM34     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4611647..4622672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P75_RS22235 (K5P75_22235) rpmE 4613878..4614090 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  K5P75_RS22240 (K5P75_22240) priA 4614293..4616491 (+) 2199 WP_001297074.1 primosomal protein N' Machinery gene
  K5P75_RS22245 (K5P75_22245) cytR 4616647..4617672 (+) 1026 WP_000644897.1 DNA-binding transcriptional regulator CytR Regulator
  K5P75_RS22250 (K5P75_22250) ftsN 4617764..4618723 (+) 960 WP_000068834.1 cell division protein FtsN -
  K5P75_RS22255 (K5P75_22255) hslV 4618816..4619346 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  K5P75_RS22260 (K5P75_22260) hslU 4619356..4620687 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  K5P75_RS22265 (K5P75_22265) menA 4620754..4621680 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  K5P75_RS22270 (K5P75_22270) rraA 4621773..4622258 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  K5P75_RS22275 (K5P75_22275) zapB 4622343..4622588 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=526341 K5P75_RS22245 WP_000644897.1 4616647..4617672(+) (cytR) [Escherichia coli strain PC-NDM34]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALHRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=526341 K5P75_RS22245 WP_000644897.1 4616647..4617672(+) (cytR) [Escherichia coli strain PC-NDM34]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCATCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625