Detailed information NTG0526343

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JKJ11_RS14840
• Genome accession: NZ_CP068024
• Coordinates: 3181694..3182563 (+)
• Length: 289 a.a.
• NCBI ID: WP_124940291.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43133
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3176694..3187563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JKJ11_RS14820 (JKJ11_14810)	nadC	3177112..3178002 (+)	891	WP_006074430.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JKJ11_RS14825 (JKJ11_14815)	-	3178244..3178723 (+)	480	WP_006074427.1	pilin	-
JKJ11_RS14830 (JKJ11_14820)	pilB	3178723..3180414 (+)	1692	WP_038222999.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JKJ11_RS14835 (JKJ11_14825)	pilC	3180425..3181651 (+)	1227	WP_006074424.1	type II secretion system F family protein	Machinery gene
JKJ11_RS14840 (JKJ11_14830)	pilD	3181694..3182563 (+)	870	WP_124940291.1	A24 family peptidase	Machinery gene
JKJ11_RS14845 (JKJ11_14835)	coaE	3182566..3183174 (+)	609	WP_252038393.1	dephospho-CoA kinase	-
JKJ11_RS14850 (JKJ11_14840)	zapD	3183206..3183946 (+)	741	WP_006074420.1	cell division protein ZapD	-
JKJ11_RS14855 (JKJ11_14845)	yacG	3183968..3184162 (+)	195	WP_006074419.1	DNA gyrase inhibitor YacG	-
JKJ11_RS14860 (JKJ11_14850)	rplS	3184362..3184715 (-)	354	WP_006074418.1	50S ribosomal protein L19	-
JKJ11_RS14865 (JKJ11_14855)	trmD	3184758..3185507 (-)	750	WP_038224311.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
JKJ11_RS14870 (JKJ11_14860)	rimM	3185542..3186099 (-)	558	WP_031494889.1	ribosome maturation factor RimM	-
JKJ11_RS14875 (JKJ11_14865)	rpsP	3186120..3186368 (-)	249	WP_031494887.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32320.61 Da
• Isoelectric Point: 6.9212

>NTDB_id=526343 JKJ11_RS14840 WP_124940291.1 3181694..3182563(+) (pilD) [Vibrio sp. SCSIO 43133]
MDAFSYYPWLFPAFAALFGLIVGSFLNVVIYRLPIMMERGWREECAEAFPEYKIAPPEDKFNLSVPRSACPKCHTPIRII
DNIPVLSWLLLKGKCHHCSHKISARYPLIELLTAAMCATVAWQLGYSEYSLALIVFTFVLIGATFIDFDTMLLPDQLTLP
LMWLGIALALLGISPISLTDSVIGAMAGYLCLWSIFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPLIVLMSSVVGV
LFGLVQLRMQKKGIDVAFPFGPYLAIAGWISALWGEQLIQYYLTSYIGM

Nucleotide

• Length: 870 bp

>NTDB_id=526343 JKJ11_RS14840 WP_124940291.1 3181694..3182563(+) (pilD) [Vibrio sp. SCSIO 43133]
ATGGACGCATTTTCTTATTATCCTTGGCTCTTCCCTGCTTTTGCGGCTCTCTTCGGCTTGATCGTTGGCAGTTTTTTGAA
TGTCGTCATTTATCGATTACCGATAATGATGGAGCGTGGTTGGCGCGAAGAATGTGCCGAAGCCTTTCCTGAGTACAAAA
TTGCCCCTCCAGAAGATAAATTTAACCTTAGCGTGCCGCGCTCGGCATGCCCTAAATGCCATACACCGATTCGAATTATC
GATAATATTCCTGTACTCAGCTGGTTGTTACTTAAGGGCAAGTGTCATCATTGCAGTCATAAAATCAGTGCTCGTTACCC
ACTTATTGAGCTCCTGACGGCAGCCATGTGTGCAACCGTAGCGTGGCAACTTGGGTATAGTGAATATAGCTTAGCGTTAA
TCGTCTTTACCTTCGTGCTTATCGGTGCCACTTTTATTGACTTCGATACCATGCTGTTGCCAGACCAGCTTACCTTACCT
CTGATGTGGTTAGGCATTGCACTAGCATTATTAGGCATCTCTCCAATTTCGTTGACGGATTCTGTAATTGGTGCCATGGC
TGGCTACCTCTGCTTATGGTCCATTTTCTGGCTGTTTAAACTACTAACAGGTAAAGAGGGTATGGGCTACGGTGACTTTA
AGTTGCTGGCAGCTCTCGGAGCATGGTTAGGCTGGCAACACTTGCCTCTGATCGTCTTAATGTCATCCGTTGTCGGGGTT
TTATTTGGTCTCGTTCAATTGCGAATGCAAAAGAAAGGGATTGATGTTGCATTTCCTTTCGGCCCTTATCTCGCTATTGC
CGGTTGGATTAGCGCATTGTGGGGCGAGCAGCTTATTCAATACTACCTCACGTCGTATATAGGGATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	72.664	100	0.727
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter nosocomialis M2	51.673	93.08	0.481
pilD	Acinetobacter baumannii D1279779	50.929	93.08	0.474
pilD	Neisseria gonorrhoeae MS11	51.751	88.927	0.46