Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JCR32_RS13340 Genome accession   NZ_CP067069
Coordinates   2611457..2612038 (-) Length   193 a.a.
NCBI ID   WP_061184506.1    Uniprot ID   -
Organism   Bacillus sp. HNR-4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2606457..2617038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR32_RS13310 (JCR32_13255) - 2606472..2607308 (-) 837 WP_080501020.1 PP2C family serine/threonine-protein phosphatase -
  JCR32_RS13315 (JCR32_13260) - 2607292..2607777 (-) 486 WP_139338439.1 HIT family protein -
  JCR32_RS13320 (JCR32_13265) - 2607880..2608050 (-) 171 WP_001992228.1 hypothetical protein -
  JCR32_RS13325 (JCR32_13270) - 2608348..2609184 (-) 837 WP_001084757.1 proline/glycine betaine ABC transporter permease -
  JCR32_RS13330 (JCR32_13275) - 2609177..2610382 (-) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  JCR32_RS13335 (JCR32_13280) - 2610554..2611411 (+) 858 WP_274429635.1 glycine betaine ABC transporter substrate-binding protein -
  JCR32_RS13340 (JCR32_13285) clpP 2611457..2612038 (-) 582 WP_061184506.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JCR32_RS13345 (JCR32_13290) - 2612060..2612746 (-) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  JCR32_RS13350 (JCR32_13295) - 2612890..2613210 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  JCR32_RS13355 (JCR32_13300) rpiA 2613215..2613877 (+) 663 WP_000364539.1 ribose 5-phosphate isomerase A -
  JCR32_RS13360 (JCR32_13305) - 2613985..2614419 (+) 435 WP_000555719.1 GNAT family N-acetyltransferase -
  JCR32_RS13365 (JCR32_13310) - 2614809..2615327 (-) 519 WP_000720568.1 DNA topology modulation protein -
  JCR32_RS13370 (JCR32_13315) - 2615324..2616253 (-) 930 WP_274429637.1 phosphotransferase -
  JCR32_RS13375 (JCR32_13320) - 2616269..2616664 (-) 396 WP_087931911.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21178.46 Da        Isoelectric Point: 5.3394

>NTDB_id=524808 JCR32_RS13340 WP_061184506.1 2611457..2612038(-) (clpP) [Bacillus sp. HNR-4]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=524808 JCR32_RS13340 WP_061184506.1 2611457..2612038(-) (clpP) [Bacillus sp. HNR-4]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCAAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATCAAACCCGACGTGCAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

97.927

0.503
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487