Detailed information NTG0521037

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: JFL60_RS06395
• Genome accession: NZ_CP066567
• Coordinates: 1314196..1315329 (+)
• Length: 377 a.a.
• NCBI ID: WP_132994602.1
• Uniprot ID: A0AAX2S358
• Organism: Histophilus somni strain ASc-MMNZ-VFA-079
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1309196..1320329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFL60_RS06375 (JFL60_06375)	-	1309686..1312226 (-)	2541	WP_132994606.1	penicillin-binding protein 1A	-
JFL60_RS06380 (JFL60_06380)	-	1312351..1313136 (+)	786	WP_132994605.1	competence protein ComA	-
JFL60_RS06385 (JFL60_06385)	-	1313140..1313679 (+)	540	WP_132994604.1	PilN domain-containing protein	-
JFL60_RS06390 (JFL60_06390)	-	1313683..1314180 (+)	498	WP_132994603.1	competence protein	-
JFL60_RS06395 (JFL60_06395)	comE	1314196..1315329 (+)	1134	WP_132994602.1	type IV pilus secretin PilQ	Machinery gene
JFL60_RS06400 (JFL60_06400)	aroK	1315511..1316038 (+)	528	WP_012340254.1	shikimate kinase AroK	-
JFL60_RS06405 (JFL60_06405)	aroB	1316058..1317146 (+)	1089	WP_132994601.1	3-dehydroquinate synthase	-
JFL60_RS06410 (JFL60_06410)	-	1317153..1318016 (+)	864	WP_132994600.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
JFL60_RS06415 (JFL60_06415)	galU	1318064..1318951 (-)	888	WP_012340251.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 42389.42 Da
• Isoelectric Point: 6.4079

>NTDB_id=521037 JFL60_RS06395 WP_132994602.1 1314196..1315329(+) (comE) [Histophilus somni strain ASc-MMNZ-VFA-079]
MLIKNFLYFFLFLFTVSVELSARDPFDKRQRSIKKETNIQLDTKENLSKSTNEPNLTTTSIKLHYAKAADVMKSLTTGQG
SWLSSNGTFSFDERSNLLLIQDNQETLNALKKLIKEMDQPIEQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGN
LAANGFQHLTEQLNVNFATTATPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVI
TGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLLVSQNSPGSRITYGQNEMVSIDKQEINTQVFARDGETIVLGGVFH
DTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTPRIIRSEQPDEIIKPLK

Nucleotide

• Length: 1134 bp

>NTDB_id=521037 JFL60_RS06395 WP_132994602.1 1314196..1315329(+) (comE) [Histophilus somni strain ASc-MMNZ-VFA-079]
ATGTTAATTAAAAATTTCTTATATTTCTTTTTGTTCTTATTCACAGTAAGTGTGGAATTATCTGCTAGAGATCCCTTTGA
TAAAAGACAAAGAAGCATAAAAAAAGAGACAAATATACAATTAGATACAAAGGAAAATTTGTCAAAATCGACTAATGAGC
CAAATTTAACGACGACTTCGATCAAATTACATTATGCTAAAGCGGCTGATGTAATGAAATCACTGACTACAGGTCAAGGT
TCATGGCTTTCATCAAATGGAACTTTTAGTTTTGATGAACGAAGTAACTTGCTCTTAATTCAGGATAATCAGGAAACTCT
CAATGCCTTAAAAAAATTAATCAAAGAAATGGATCAACCTATTGAACAAATTGCAATTGAAGCGAGAATTGTAACAATTA
GTGATGAAAATTTAAAAGAATTAGGGGTTCGTTGGGGAATTTTTGAGCCTACAAATAACGCTCATCATCTTTCAGGCAAT
CTAGCGGCAAACGGATTTCAGCATTTAACGGAACAACTTAACGTCAATTTTGCTACTACCGCAACACCTGCAGGTTCTAT
TGCTTTACAAATTGCCAAAATTAATGATCGACTTTTAGACTTAGAACTTACCGCACTTGAACGAGAAAATAATGTAGAAA
TTATTGCAAGCCCTCGTTTACTTACAACGAATAAGCAAAGTGCAAGTATTAAACAAGGAACTGAAATTCCTTATGTTATT
ACCGGCAAGAAATCTGATGAACAGAAAGTAGAGTTTAGAGAAGCAGTTTTAGGATTAGAAGTAACGCCACACATTTCTAA
AGACAATACTATTTTGCTGGATCTCCTTGTAAGCCAAAACTCCCCTGGAAGTCGTATTACTTATGGGCAAAATGAAATGG
TATCTATTGATAAACAAGAAATTAATACTCAAGTTTTTGCACGAGATGGGGAAACAATTGTGTTGGGTGGCGTATTTCAC
GATACAATCACAAAAGGAGTAGATAAAGTACCGTTGTTAGGAGATATACCTATATTAAAAAGACTGTTCAGCCGTGAAAG
TGAAAGACACCAAAAACGTGAATTAGTAATTTTTGTTACCCCAAGGATCATTCGTTCAGAACAACCTGATGAAATAATAA
AACCATTAAAATAG

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (60-123)

• Bacterial type II and III secretion system protein (Secretin) (205-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae 86-028NP	75.077	86.207	0.647
comE	Haemophilus influenzae Rd KW20	74.769	86.207	0.645
comE	Glaesserella parasuis strain SC1401	61.587	83.554	0.515
pilQ	Vibrio campbellii strain DS40M4	44.932	96.817	0.435
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	47.205	85.411	0.403
pilQ	Vibrio cholerae strain A1552	47.205	85.411	0.403