Detailed information NTG0519404

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: Xdur_RS17585
• Genome accession: NZ_CP066343
• Coordinates: 4015712..4016968 (+)
• Length: 418 a.a.
• NCBI ID: WP_040107659.1
• Uniprot ID: A0AAI7ZHE3
• Organism: Xanthomonas citri pv. durantae strain LMG696
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4010712..4021968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Xdur_RS17560 (Xdur_017515)	pilB	4011228..4012964 (-)	1737	WP_011052125.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Xdur_RS17565 (Xdur_017520)	-	4013028..4013348 (-)	321	WP_258383178.1	pilin	-
Xdur_RS17575 (Xdur_017530)	-	4014668..4014805 (-)	138	Protein_3441	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
Xdur_RS17580 (Xdur_017535)	-	4014915..4015355 (-)	441	WP_015471735.1	pilin	-
Xdur_RS17585 (Xdur_017540)	pilC	4015712..4016968 (+)	1257	WP_040107659.1	type II secretion system F family protein	Machinery gene
Xdur_RS17590 (Xdur_017545)	-	4016975..4017838 (+)	864	WP_040277202.1	A24 family peptidase	-
Xdur_RS17595 (Xdur_017550)	coaE	4017852..4018460 (+)	609	WP_011052129.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45374.73 Da
• Isoelectric Point: 10.2788

>NTDB_id=519404 Xdur_RS17585 WP_040107659.1 4015712..4016968(+) (pilC) [Xanthomonas citri pv. durantae strain LMG696]
MSAARSVVKTKTAASAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=519404 Xdur_RS17585 WP_040107659.1 4015712..4016968(+) (pilC) [Xanthomonas citri pv. durantae strain LMG696]
ATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGACCGCCGCATCGGCGGAGCAGATGAGTCCGTTTGTCTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGCGCCGAGTTACGGCGCCAGG
GCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAACCACTATTCGGCGCTGCCGGAAAGAAAGTTTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCCGGCGTGCCGATTGTCGGCGCGCTGGAGATCATTGGCAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGACAGATTAGGACAGATATCGAAGGGGGGGCATCGCTCTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAGGCGAAGGCGCAGGGGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTGAAAGGCAAGATCAAGAAGGCACTGTTCTACCCTGC
CATGGTAATGGCAGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTTCCCCAATTTGAAGATGTCTTCAAGG
GCTTTGGAGCGGAGCTGCCTGCGTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCAATGCAACATGGCATGGACCG
CCTGGTGCTAAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCAATTGCAAGATTCGCCCGGACGACGGCGGTGA
CCTTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGTAATTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCCGTGGGCTACCCGGTCAACGTCGCGATGAAACAGGTCAACCTGTTTCCGCATAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.086	96.89	0.514
pilC	Acinetobacter baylyi ADP1	51.843	97.368	0.505
pilC	Acinetobacter baumannii D1279779	51.613	96.411	0.498
pilC	Legionella pneumophila strain ERS1305867	52.525	94.737	0.498
pilG	Neisseria meningitidis 44/76-A	42.963	96.89	0.416
pilG	Neisseria gonorrhoeae MS11	42.822	96.651	0.414
pilC	Vibrio cholerae strain A1552	41.814	94.976	0.397
pilC	Vibrio campbellii strain DS40M4	39.95	96.411	0.385