Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JC772_RS18270 Genome accession   NZ_CP066187
Coordinates   3613878..3614459 (-) Length   193 a.a.
NCBI ID   WP_087094975.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain E28.3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3608878..3619459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC772_RS18245 (JC772_18245) - 3609194..3610036 (+) 843 WP_012094385.1 oxidoreductase -
  JC772_RS18250 (JC772_18250) - 3610190..3610486 (-) 297 WP_012094386.1 metalloregulator ArsR/SmtB family transcription factor -
  JC772_RS18255 (JC772_18255) - 3610752..3611591 (-) 840 WP_012094387.1 proline/glycine betaine ABC transporter permease -
  JC772_RS18260 (JC772_18260) - 3611584..3612789 (-) 1206 WP_048723028.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  JC772_RS18265 (JC772_18265) - 3612966..3613823 (+) 858 WP_087094974.1 glycine betaine ABC transporter substrate-binding protein -
  JC772_RS18270 (JC772_18270) clpP 3613878..3614459 (-) 582 WP_087094975.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JC772_RS18275 (JC772_18275) - 3614481..3615164 (-) 684 WP_012094391.1 RNA polymerase subunit sigma-70 -
  JC772_RS18280 (JC772_18280) - 3615311..3615631 (+) 321 WP_012094392.1 2Fe-2S iron-sulfur cluster-binding protein -
  JC772_RS22650 (JC772_18285) rpiA 3615648..3616312 (+) 665 Protein_3566 ribose 5-phosphate isomerase A -
  JC772_RS18290 (JC772_18290) - 3616500..3616937 (+) 438 WP_012094393.1 GNAT family N-acetyltransferase -
  JC772_RS18295 (JC772_18295) - 3617135..3617483 (-) 349 Protein_3568 GNAT family N-acetyltransferase -
  JC772_RS18300 (JC772_18300) - 3617618..3617941 (-) 324 WP_087094992.1 DUF952 domain-containing protein -
  JC772_RS18305 (JC772_18305) - 3617979..3618326 (-) 348 WP_012094395.1 hypothetical protein -
  JC772_RS18310 (JC772_18310) - 3618480..3619181 (-) 702 WP_087094976.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21215.48 Da        Isoelectric Point: 5.0724

>NTDB_id=518320 JC772_RS18270 WP_087094975.1 3613878..3614459(-) (clpP) [Bacillus cytotoxicus strain E28.3]
MNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASNVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGLAASFGALLLLSGTKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRIVKLKQDINNIISDRTGQ
PIEKVARDTERDYFMTAEEAKTYGIVDAVITKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=518320 JC772_RS18270 WP_087094975.1 3613878..3614459(-) (clpP) [Bacillus cytotoxicus strain E28.3]
ATGAATACAATTCCATATGTTGTGGAACAAACAAAGTTAGGAGAACGCTCCTATGATATATATTCTAGATTATTAAAAGA
TCGTATTGTGATGATTGGTTCAGAAATTAATGATCAAGTTGCAAGTAATGTAGTGGCGCAGTTATTGTTTTTAGAAGCAG
AAGATGCAGAAAAAGATATTTTTCTTTATATTAATAGTCCAGGTGGTTCGACGACAGCAGGATTTGCGATTTTAGATACA
ATGAATTTGATTAAGCCAGATGTACAAACGCTTTGTATGGGCTTGGCAGCATCATTTGGGGCACTTTTGTTGCTTAGCGG
AACAAAAGGAAAACGATTTGCGCTCCCAAATAGTGAAATTATGATTCACCAGCCGCTTGGCGGAGCAAAAGGGCAAGCGA
CAGAGATTGAAATAACAGCAAAGCGGATAGTAAAGTTAAAACAAGACATTAACAATATTATATCCGACCGAACAGGGCAA
CCAATTGAAAAAGTAGCGCGTGATACAGAAAGAGATTACTTTATGACGGCAGAAGAAGCAAAAACATACGGGATTGTTGA
TGCGGTTATTACAAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

66.492

98.964

0.658
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

97.927

0.648
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

53.968

97.927

0.528
  clpP Streptococcus pyogenes JRS4

53.968

97.927

0.528
  clpP Streptococcus pneumoniae D39

53.968

97.927

0.528
  clpP Streptococcus pneumoniae R6

53.968

97.927

0.528
  clpP Streptococcus pneumoniae TIGR4

53.968

97.927

0.528
  clpP Streptococcus pneumoniae Rx1

53.968

97.927

0.528
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492