Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JC773_RS16315 Genome accession   NZ_CP066185
Coordinates   3217852..3218433 (-) Length   193 a.a.
NCBI ID   WP_041809745.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3212852..3223433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS16290 (JC773_16290) - 3213168..3214010 (+) 843 WP_012094385.1 oxidoreductase -
  JC773_RS16295 (JC773_16295) - 3214164..3214460 (-) 297 WP_048723025.1 metalloregulator ArsR/SmtB family transcription factor -
  JC773_RS16300 (JC773_16300) - 3214726..3215565 (-) 840 WP_012094387.1 proline/glycine betaine ABC transporter permease -
  JC773_RS16305 (JC773_16305) - 3215558..3216763 (-) 1206 WP_048723028.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  JC773_RS16310 (JC773_16310) - 3216940..3217797 (+) 858 WP_012094389.1 glycine betaine ABC transporter substrate-binding protein -
  JC773_RS16315 (JC773_16315) clpP 3217852..3218433 (-) 582 WP_041809745.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JC773_RS16320 (JC773_16320) - 3218455..3219138 (-) 684 WP_012094391.1 RNA polymerase subunit sigma-70 -
  JC773_RS16325 (JC773_16325) - 3219285..3219605 (+) 321 WP_012094392.1 2Fe-2S iron-sulfur cluster-binding protein -
  JC773_RS22600 (JC773_16330) rpiA 3219622..3220286 (+) 665 Protein_3168 ribose 5-phosphate isomerase A -
  JC773_RS16335 (JC773_16335) - 3220474..3220911 (+) 438 WP_012094393.1 GNAT family N-acetyltransferase -
  JC773_RS16340 (JC773_16340) - 3221153..3221501 (-) 349 Protein_3170 GNAT family N-acetyltransferase -
  JC773_RS16345 (JC773_16345) - 3221636..3221959 (-) 324 WP_087094992.1 DUF952 domain-containing protein -
  JC773_RS16350 (JC773_16350) - 3221997..3222344 (-) 348 WP_012094395.1 hypothetical protein -
  JC773_RS16355 (JC773_16355) - 3222498..3223199 (-) 702 WP_210351580.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21202.48 Da        Isoelectric Point: 5.0724

>NTDB_id=518266 JC773_RS16315 WP_041809745.1 3217852..3218433(-) (clpP) [Bacillus cytotoxicus strain PDT2.12]
MNTIPYVVEQTKLGERSYDIYSRLLKDRIVMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGLAASFGALLLLSGTKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKQDINNIISDRTGQ
PIEKVARDTERDYFMTAEEAKTYGIVDAVITKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=518266 JC773_RS16315 WP_041809745.1 3217852..3218433(-) (clpP) [Bacillus cytotoxicus strain PDT2.12]
ATGAATACAATTCCATATGTTGTGGAACAAACAAAGTTAGGAGAACGCTCCTATGATATATATTCTAGATTATTAAAAGA
TCGTATTGTGATGATTGGTTCAGAAATTAATGATCAAGTTGCAAGTAGTGTAGTGGCTCAGTTATTGTTTTTAGAAGCAG
AAGATGCAGAAAAAGATATTTTTCTTTATATTAATAGTCCAGGTGGTTCGACGACAGCAGGATTTGCGATTTTAGATACA
ATGAATTTGATTAAGCCAGATGTACAAACGCTTTGTATGGGCTTGGCAGCATCATTTGGGGCACTTTTGTTGCTTAGCGG
AACAAAAGGAAAACGATTTGCGCTCCCAAATAGTGAAATTATGATTCACCAGCCGCTTGGCGGAGCAAAAGGGCAAGCGA
CAGAGATTGAAATAACAGCAAAGCGGATATTAAAGTTAAAACAAGATATTAACAATATTATATCCGATCGAACAGGGCAA
CCAATTGAAAAAGTAGCGCGTGATACAGAAAGAGATTACTTTATGACGGCAGAAGAAGCAAAAACATACGGGATTGTTGA
TGCGGTTATTACAAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus thermophilus LMG 18311

56.771

99.482

0.565
  clpP Streptococcus thermophilus LMD-9

56.771

99.482

0.565
  clpP Streptococcus pneumoniae R6

54.167

99.482

0.539
  clpP Streptococcus pneumoniae D39

54.167

99.482

0.539
  clpP Streptococcus pneumoniae TIGR4

54.167

99.482

0.539
  clpP Streptococcus pneumoniae Rx1

54.167

99.482

0.539
  clpP Streptococcus pyogenes MGAS315

55.026

97.927

0.539
  clpP Streptococcus pyogenes JRS4

55.026

97.927

0.539
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

97.927

0.503