Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JC774_RS05665 Genome accession   NZ_CP066179
Coordinates   1066438..1067019 (-) Length   193 a.a.
NCBI ID   WP_012096148.1    Uniprot ID   A7GUT3
Organism   Bacillus cytotoxicus strain SM2.8     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061438..1072019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC774_RS05635 (JC774_05635) - 1061630..1062436 (+) 807 WP_012096154.1 DUF368 domain-containing protein -
  JC774_RS05640 (JC774_05640) - 1062616..1063074 (+) 459 WP_012096153.1 8-oxo-dGTP diphosphatase -
  JC774_RS05645 (JC774_05645) rapZ 1063095..1063976 (+) 882 WP_012096152.1 RNase adapter RapZ -
  JC774_RS05650 (JC774_05650) - 1063980..1064933 (+) 954 WP_012096151.1 YvcK family protein -
  JC774_RS05655 (JC774_05655) whiA 1065021..1065971 (+) 951 WP_012096150.1 DNA-binding protein WhiA -
  JC774_RS05660 (JC774_05660) - 1065993..1066250 (+) 258 WP_012096149.1 HPr family phosphocarrier protein -
  JC774_RS05665 (JC774_05665) clpP 1066438..1067019 (-) 582 WP_012096148.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JC774_RS05670 (JC774_05670) - 1067270..1068139 (-) 870 WP_087095558.1 DUF421 domain-containing protein -
  JC774_RS05675 (JC774_05675) - 1068160..1068366 (-) 207 WP_012096145.1 DUF1657 domain-containing protein -
  JC774_RS05680 (JC774_05680) spoVAE 1068378..1068728 (-) 351 WP_012096144.1 stage V sporulation protein AE -
  JC774_RS05685 (JC774_05685) spoVAD 1068725..1069741 (-) 1017 WP_048723474.1 stage V sporulation protein AD -
  JC774_RS05690 (JC774_05690) spoVAC 1069742..1070218 (-) 477 WP_012096142.1 stage V sporulation protein AC -
  JC774_RS05695 (JC774_05695) - 1070253..1070741 (-) 489 WP_048723473.1 YhcN/YlaJ family sporulation lipoprotein -
  JC774_RS05700 (JC774_05700) - 1070832..1071038 (-) 207 WP_012096140.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21418.68 Da        Isoelectric Point: 5.0645

>NTDB_id=518140 JC774_RS05665 WP_012096148.1 1066438..1067019(-) (clpP) [Bacillus cytotoxicus strain SM2.8]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHLYINSPGGSITAGMAIYDT
MQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNKILAERTGQ
PLEVIERDTDRDNFMTAEKALEYGLIDRIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=518140 JC774_RS05665 WP_012096148.1 1066438..1067019(-) (clpP) [Bacillus cytotoxicus strain SM2.8]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAATGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCATTTATACATTAACAGCCCTGGTGGTTCTATTACAGCAGGTATGGCCATCTATGACACA
ATGCAGTTCATTAAGCCAAACGTATCAACTATTTGTATCGGTATGGCAGCATCTATGGGTGCATTCCTACTTGCAGCTGG
TGAAAAAGGAAAACGCTTCGCACTTCCAAACAGTGAAGTTATGATCCACCAACCACTTGGTGGTGCACAAGGACAAGCAA
CTGAAATTGAAATCGCTGCAAAACGCATCCTATTCCTACGCGATAAATTAAACAAAATCCTTGCAGAACGCACAGGCCAA
CCACTAGAAGTCATCGAACGCGACACAGACCGTGACAACTTCATGACAGCCGAAAAAGCACTAGAATACGGCCTAATCGA
TAGAATCTTTACAAACCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GUT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.188

99.482

0.917
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

97.409

0.663
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Streptococcus pneumoniae TIGR4

59.375

99.482

0.591
  clpP Streptococcus pneumoniae D39

59.375

99.482

0.591
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

99.482

0.591
  clpP Streptococcus pneumoniae Rx1

59.375

99.482

0.591
  clpP Streptococcus pneumoniae R6

59.375

99.482

0.591
  clpP Streptococcus pyogenes JRS4

57.812

99.482

0.575
  clpP Streptococcus pyogenes MGAS315

57.812

99.482

0.575
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

99.482

0.57
  clpP Streptococcus mutans UA159

56.995

100

0.57