Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   JDY60_RS06805 Genome accession   NZ_CP066172
Coordinates   1443152..1445131 (-) Length   659 a.a.
NCBI ID   WP_200370491.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438152..1450131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06785 (JDY60_06785) amiF 1438647..1439576 (-) 930 WP_200370488.1 ATP-binding cassette domain-containing protein Regulator
  JDY60_RS06790 (JDY60_06790) amiE 1439587..1440654 (-) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS06795 (JDY60_06795) amiD 1440663..1441589 (-) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  JDY60_RS06800 (JDY60_06800) amiC 1441589..1443085 (-) 1497 WP_200370490.1 ABC transporter permease Regulator
  JDY60_RS06805 (JDY60_06805) amiA 1443152..1445131 (-) 1980 WP_200370491.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06815 (JDY60_06815) - 1445634..1446965 (-) 1332 WP_200370492.1 hemolysin family protein -
  JDY60_RS06820 (JDY60_06820) - 1447101..1447924 (-) 824 Protein_1336 DNA/RNA non-specific endonuclease -
  JDY60_RS06825 (JDY60_06825) - 1447965..1448159 (-) 195 WP_000739700.1 DNA-directed RNA polymerase subunit beta -
  JDY60_RS06830 (JDY60_06830) murA 1448146..1449429 (-) 1284 WP_180833558.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JDY60_RS06835 (JDY60_06835) - 1449453..1449683 (-) 231 WP_002892633.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72736.81 Da        Isoelectric Point: 4.7627

>NTDB_id=518066 JDY60_RS06805 WP_200370491.1 1443152..1445131(-) (amiA) [Streptococcus oralis strain SF100]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSAAKYLAEDSVKGLADYIAGNNKDFASV
GVKAVDDYTLEYTLNKPEPYWNSKLAYSIFWPLNEEFEKSKGSDFGKATDPTSLLYNGPFLLRGLTAKSSIEFVKNENYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VSFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEENVVIDIQQITTDE
LQNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAGKETS
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=518066 JDY60_RS06805 WP_200370491.1 1443152..1445131(-) (amiA) [Streptococcus oralis strain SF100]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGTGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATACAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTCGCCACTTCAAATGGTATCGACGGTCTTTTCACAAACGACAAGTATGGGAATTTAGTTCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCTGATGGCGAAGAGTATGCTGAAGTAACAGCCAAAGACTTTGTAAATGGTTTGAAACACGCAGCTGACAATAAATCAG
CAGCTAAGTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATATAGCTGGAAACAATAAAGATTTTGCTTCAGTC
GGTGTAAAAGCAGTTGATGATTATACCCTTGAATACACTTTGAACAAACCAGAACCATACTGGAACTCTAAGCTGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGATTTTGGTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAGAGGTTTGACTGCTAAGTCATCTATCGAATTTGTGAAGAATGAAAACTATTGG
GACAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCTGATCAAGAATCAATTGAACGTAACTT
TACAAGTGGGGCTTATAGCTATGCCCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGTCCAGGTATTGGTGGTTTGGGTGTAAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAGGAAGGCGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
ACTTTGTCTCTGCAGGCGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAATGGAAGAAT
GTAAGCTTTGCGGATGGTCAAGATGGACTTTTCAACGCCGATAAAGCCAAAGCAGAATTTGCGAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAGACAGTACTTGGAGAAGAAAACGTAGTCATCGATATCCAACAAATCACTACAGATGAA
CTACAGAATATTACATACTATGCAGCAAGCGCTGCGGCAGAAGATTGGGATCTCTCAGGTGCTGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACTAAAACATACATGGGTTATGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCAGGAAAAGAAACAAGT
GACTTGAATGTTCGTTATGAAAAATACGCGGCTGCCCAAGCTTGGTTGACAGATAGTTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTGCCATTCACAGCATCATACAGCCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGATTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677