Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   JDY60_RS06795 Genome accession   NZ_CP066172
Coordinates   1440663..1441589 (-) Length   308 a.a.
NCBI ID   WP_000103935.1    Uniprot ID   A0A7H9FEK4
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435663..1446589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06775 (JDY60_06775) trkA 1435766..1437115 (+) 1350 WP_200370479.1 Trk system potassium transporter TrkA -
  JDY60_RS06780 (JDY60_06780) - 1437119..1438558 (+) 1440 WP_200370481.1 TrkH family potassium uptake protein -
  JDY60_RS06785 (JDY60_06785) amiF 1438647..1439576 (-) 930 WP_200370488.1 ATP-binding cassette domain-containing protein Regulator
  JDY60_RS06790 (JDY60_06790) amiE 1439587..1440654 (-) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS06795 (JDY60_06795) amiD 1440663..1441589 (-) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  JDY60_RS06800 (JDY60_06800) amiC 1441589..1443085 (-) 1497 WP_200370490.1 ABC transporter permease Regulator
  JDY60_RS06805 (JDY60_06805) amiA 1443152..1445131 (-) 1980 WP_200370491.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34575.62 Da        Isoelectric Point: 9.3349

>NTDB_id=518064 JDY60_RS06795 WP_000103935.1 1440663..1441589(-) (amiD) [Streptococcus oralis strain SF100]
MSTIGKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=518064 JDY60_RS06795 WP_000103935.1 1440663..1441589(-) (amiD) [Streptococcus oralis strain SF100]
ATGTCAACAATCGGAAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGATTTCAACGATGTAAGTAAGGTCAATGACTTTAGTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCAACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATCTGGGGAA
TTTCAAAATCTGTAGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCATATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTAGAATACAACCTTGCTTCTCAAACGCTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTACCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTATTCTGGATTCCATTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9FEK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815