Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   JDY60_RS06785 Genome accession   NZ_CP066172
Coordinates   1438647..1439576 (-) Length   309 a.a.
NCBI ID   WP_200370488.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433647..1444576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06765 (JDY60_06765) - 1433886..1434449 (-) 564 WP_200370477.1 ECF transporter S component -
  JDY60_RS06770 (JDY60_06770) - 1434862..1435365 (-) 504 WP_000181363.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  JDY60_RS06775 (JDY60_06775) trkA 1435766..1437115 (+) 1350 WP_200370479.1 Trk system potassium transporter TrkA -
  JDY60_RS06780 (JDY60_06780) - 1437119..1438558 (+) 1440 WP_200370481.1 TrkH family potassium uptake protein -
  JDY60_RS06785 (JDY60_06785) amiF 1438647..1439576 (-) 930 WP_200370488.1 ATP-binding cassette domain-containing protein Regulator
  JDY60_RS06790 (JDY60_06790) amiE 1439587..1440654 (-) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS06795 (JDY60_06795) amiD 1440663..1441589 (-) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  JDY60_RS06800 (JDY60_06800) amiC 1441589..1443085 (-) 1497 WP_200370490.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35095.29 Da        Isoelectric Point: 7.0425

>NTDB_id=518062 JDY60_RS06785 WP_200370488.1 1438647..1439576(-) (amiF) [Streptococcus oralis strain SF100]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFRDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKKALKE

Nucleotide


Download         Length: 930 bp        

>NTDB_id=518062 JDY60_RS06785 WP_200370488.1 1438647..1439576(-) (amiF) [Streptococcus oralis strain SF100]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTCTAAATAATACCAGTAAAGGTGAAATCATCTTTGATGGTCATAAAATTAATGGGAAAAAATCTCATAAG
GAATCATCAGATTTGATCCGTCGCATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTCAGAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGGCTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTAGACGTATCTGTTCGCGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTCATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAGGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCAATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCGTCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCAGAACTTGCTCGTTACAAGAAAGCTCTTAAAGAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.902

98.706

0.848
  amiF Streptococcus thermophilus LMG 18311

84.918

98.706

0.838
  amiF Streptococcus thermophilus LMD-9

84.59

98.706

0.835