Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   JDY60_RS06800 Genome accession   NZ_CP066172
Coordinates   1441589..1443085 (-) Length   498 a.a.
NCBI ID   WP_200370490.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436589..1448085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06780 (JDY60_06780) - 1437119..1438558 (+) 1440 WP_200370481.1 TrkH family potassium uptake protein -
  JDY60_RS06785 (JDY60_06785) amiF 1438647..1439576 (-) 930 WP_200370488.1 ATP-binding cassette domain-containing protein Regulator
  JDY60_RS06790 (JDY60_06790) amiE 1439587..1440654 (-) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS06795 (JDY60_06795) amiD 1440663..1441589 (-) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  JDY60_RS06800 (JDY60_06800) amiC 1441589..1443085 (-) 1497 WP_200370490.1 ABC transporter permease Regulator
  JDY60_RS06805 (JDY60_06805) amiA 1443152..1445131 (-) 1980 WP_200370491.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06815 (JDY60_06815) - 1445634..1446965 (-) 1332 WP_200370492.1 hemolysin family protein -
  JDY60_RS06820 (JDY60_06820) - 1447101..1447924 (-) 824 Protein_1336 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55717.10 Da        Isoelectric Point: 9.2425

>NTDB_id=518065 JDY60_RS06800 WP_200370490.1 1441589..1443085(-) (amiC) [Streptococcus oralis strain SF100]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLIDIDHTNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNVNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=518065 JDY60_RS06800 WP_200370490.1 1441589..1443085(-) (amiC) [Streptococcus oralis strain SF100]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACTTTGACTTACACAATTAT
TTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACACCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCGAGC
ACAATGGACTCATCTGTAACAGTAGATGCCAATGATACCAACAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACGCTAGGTGTATTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATGCCAACTTGATTGATATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGCTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAGTATCTTTTGTATTTCAACAA
CCAATTCCCATTTGTACACCAAAACTTTGTAAACGTTAACTTAGGTGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACCCAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCTGTA
GATATCTACTCTCGTACCTACAAATCACCAAGTCAAGCAGACGCACGTGAGGTGGCAAACTATGGTAAGGACGATCCTTA
CACGGCTACAGAAAGCAATTACCAATATCCATCTATGATTGCAAGTTCAGCTGTTGCTGGTTTGATTGGTTTGATTATCT
CGTATGCTATCGCTATTCCACTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGACAGCTTCTCGACAGGTGCT
CTGACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTATATATTGTGCGCTTGATTGGATCATCTATCGGTCTGCCAGA
CTCATTCCCTATCTTGGGGGCTGGAGATTGGCGTTCTTATGTCCTGCCAGCAGTTATTTTAGGTCTATTGGGTGCTCCAA
GTACGGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAAGACTTCGTACGTTTTGCTCGCGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCCAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACTATGCTTGATCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.305

100

0.763
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761