Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I9190_RS19510 Genome accession   NZ_CP066121
Coordinates   4215594..4217765 (-) Length   723 a.a.
NCBI ID   WP_058971043.1    Uniprot ID   A0A8I1DH50
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4210594..4222765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS19495 (I9190_19495) - 4213011..4213880 (-) 870 WP_042089089.1 hypothetical protein -
  I9190_RS19500 (I9190_19500) aroB 4213899..4214978 (-) 1080 WP_058971040.1 3-dehydroquinate synthase -
  I9190_RS19505 (I9190_19505) aroK 4215015..4215557 (-) 543 WP_004825383.1 shikimate kinase AroK -
  I9190_RS19510 (I9190_19510) pilQ 4215594..4217765 (-) 2172 WP_058971043.1 type IV pilus secretin PilQ Machinery gene
  I9190_RS19515 (I9190_19515) comL 4217786..4218316 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  I9190_RS19520 (I9190_19520) comO 4218313..4219065 (-) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  I9190_RS19525 (I9190_19525) pilN 4219062..4219703 (-) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  I9190_RS19530 (I9190_19530) comM 4219703..4220761 (-) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 78566.15 Da        Isoelectric Point: 7.2148

>NTDB_id=517530 I9190_RS19510 WP_058971043.1 4215594..4217765(-) (pilQ) [Acinetobacter bereziniae strain GD0320]
MKKSLKNILIGDGKFMNSQLRQFTMATVAIAITQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLV
LDFDNAKQNISQASIPVASEEASTVDVAADDQRSRLTVNLKNSGAFTTRVEGNTFILKINNANQAPSLPSYVSSTVSKQN
QGIADIGFQRGNAGEGQVIVSLSGANTPVDVQQQGSKVVIRTLGNKIPTHLLRRLNVNDFATPVSSVDAYNDGSNGVITI
QSSGSYEYMAFQAENKLTVSLKRPAENKVARPSSSQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKALAQSVKLAPIQTEYIQLNYTKVADVLKLLEDSRN
PKGAEANRTTNTESLALESLLSLRGSAVADTRTNTLIINDTANNIDKIRKMIDLLDVSIKQVMVEARIVRATTDFTKEMG
VKWGILSQGINKNNDLLVGGSDQTLWDLRTPDDDGKYTITRPDNLNVDLGVTTTGASKIAFGLISMSDFMLDLELSALQS
DGYGEVISTPKVMTADKQKAKVSSGQQIPYQTTQTAGGAATATTSFKDALLSLDVTPSITPDGKVQMQLNITSDSPAGTA
PNGEIILNKNEVNTNVLVDNGETVVLGGIFEQETKSSQTKVPFLGDIPYLGRLFRKDLKSDNKRELLIFVTPRIVNDSRT
RNH

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=517530 I9190_RS19510 WP_058971043.1 4215594..4217765(-) (pilQ) [Acinetobacter bereziniae strain GD0320]
ATGAAAAAGAGTTTGAAAAATATCTTGATTGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGAC
GGTCGCAATTGCAATTACACAAGTTGCAGCAGCACAAACCACGATGACCAACATTGTTCCGATGAAAATACCGGGGCAAG
GGACAGAAATTCGTGTCATGTTTAATGGTCTTCCTCCGCAGCCACAAGCCTATCAATTGGATAATCCATCTCGTTTAGTG
TTGGATTTTGACAATGCTAAACAAAATATTAGCCAAGCATCTATTCCCGTAGCGAGTGAGGAGGCTTCAACAGTCGATGT
CGCTGCAGATGATCAACGTTCTCGGTTAACGGTAAATTTAAAAAATAGTGGTGCTTTTACAACACGTGTTGAAGGCAATA
CTTTTATTTTAAAAATTAATAATGCCAATCAAGCACCGAGCTTACCAAGTTATGTATCTTCGACGGTCAGTAAGCAAAAT
CAAGGGATTGCTGATATTGGCTTCCAACGTGGAAATGCTGGCGAAGGACAAGTAATTGTGAGCCTTTCGGGTGCAAATAC
CCCAGTGGATGTCCAGCAGCAAGGCAGTAAGGTCGTTATTCGAACATTGGGAAATAAAATTCCTACACATTTATTGCGTC
GTTTAAATGTCAATGATTTTGCAACACCTGTCTCTAGCGTAGACGCTTATAACGACGGTTCCAATGGTGTTATCACCATT
CAATCATCGGGTAGCTATGAATATATGGCTTTCCAAGCTGAAAATAAATTAACAGTCAGCTTGAAACGACCTGCAGAAAA
TAAGGTGGCTCGCCCAAGTTCAAGCCAATCTTATACAGGCAAGAAAATATCGCTAGATTTCCAAGATATTGAAGTCCGTC
GAGTGTTGCAGTTATTGGCAGACTTTACTGGCATCAATATGGTGGCTGCTGATTCGGTACAAGGCAATATTACCCTGCGT
TTGAAAGATGTGCCTTGGGATCAAGCTTTAGACATTATCCTAAAAACAAAGAATTTGGATAAACGCCGTAATGGGAGTGT
GATTTGGATTGCGCCTGTAACTGAGTTAATTAAAGCGGAAGAGGATGAAGCAAAGGCATTAGCGCAAAGTGTAAAATTAG
CACCTATTCAAACTGAATATATTCAGCTGAATTACACCAAAGTGGCAGATGTTTTGAAATTACTGGAAGACTCTCGAAAT
CCGAAAGGGGCAGAAGCAAATCGAACCACCAATACAGAATCTTTAGCATTGGAAAGTCTTTTAAGTTTAAGAGGCAGTGC
AGTAGCTGATACACGAACAAATACTTTAATCATCAATGATACTGCGAATAATATTGATAAAATTCGTAAGATGATTGACT
TGCTTGATGTTTCTATTAAGCAAGTCATGGTTGAAGCGCGAATTGTACGTGCTACAACAGATTTTACCAAAGAAATGGGC
GTGAAATGGGGAATTCTATCTCAGGGGATTAACAAAAATAATGACCTTTTGGTGGGAGGGAGTGATCAAACCCTATGGGA
TTTAAGAACGCCAGATGATGATGGTAAATATACCATTACACGACCTGATAACTTGAATGTAGACCTTGGTGTTACAACAA
CGGGTGCGAGTAAAATAGCTTTTGGTTTAATCAGTATGTCTGATTTTATGTTGGACTTGGAGTTATCTGCTTTGCAATCT
GATGGGTATGGTGAAGTCATTTCAACACCTAAAGTGATGACTGCTGATAAACAAAAAGCCAAAGTTTCATCAGGTCAACA
AATTCCTTATCAAACAACACAAACTGCTGGTGGTGCAGCAACAGCAACCACATCATTTAAAGATGCATTATTAAGTCTGG
ATGTAACACCTAGCATTACCCCTGATGGTAAAGTGCAAATGCAGCTTAATATTACCAGCGACTCACCAGCAGGCACAGCA
CCTAATGGAGAAATTATTCTGAATAAGAATGAGGTTAATACCAATGTCTTGGTGGATAATGGTGAAACTGTAGTTTTGGG
TGGGATTTTTGAGCAAGAAACTAAAAGCAGCCAAACTAAAGTACCATTCTTAGGAGATATACCTTATCTTGGGCGTTTAT
TCCGTAAAGATCTAAAATCTGATAATAAACGTGAACTGCTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGTACG
AGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(310-352)

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-461)

Bacterial type II and III secretion system protein (Secretin)

(557-715)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.416

100

0.737
  pilQ Acinetobacter baumannii strain A118

73.416

100

0.737
  comQ Acinetobacter baylyi ADP1

70.506

98.479

0.694
  pilQ Pseudomonas aeruginosa PAK

38.057

100

0.39