Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I9190_RS19515 Genome accession   NZ_CP066121
Coordinates   4217786..4218316 (-) Length   176 a.a.
NCBI ID   WP_005034344.1    Uniprot ID   A0A0A8TMR9
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4212786..4223316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS19495 (I9190_19495) - 4213011..4213880 (-) 870 WP_042089089.1 hypothetical protein -
  I9190_RS19500 (I9190_19500) aroB 4213899..4214978 (-) 1080 WP_058971040.1 3-dehydroquinate synthase -
  I9190_RS19505 (I9190_19505) aroK 4215015..4215557 (-) 543 WP_004825383.1 shikimate kinase AroK -
  I9190_RS19510 (I9190_19510) pilQ 4215594..4217765 (-) 2172 WP_058971043.1 type IV pilus secretin PilQ Machinery gene
  I9190_RS19515 (I9190_19515) comL 4217786..4218316 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  I9190_RS19520 (I9190_19520) comO 4218313..4219065 (-) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  I9190_RS19525 (I9190_19525) pilN 4219062..4219703 (-) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  I9190_RS19530 (I9190_19530) comM 4219703..4220761 (-) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19462.49 Da        Isoelectric Point: 7.8147

>NTDB_id=517531 I9190_RS19515 WP_005034344.1 4217786..4218316(-) (comL) [Acinetobacter bereziniae strain GD0320]
MKKHNKIICGISFTLLLVGCDSRIDAVNQEMANIRSQTPLPIEPAPVFNPVPSFNYSAQQLRSPFLPSSLANELKVMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGNAGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPVD

Nucleotide


Download         Length: 531 bp        

>NTDB_id=517531 I9190_RS19515 WP_005034344.1 4217786..4218316(-) (comL) [Acinetobacter bereziniae strain GD0320]
ATGAAAAAACACAATAAAATAATCTGTGGAATCTCATTCACTTTGTTGTTGGTTGGTTGTGACTCTAGGATTGATGCCGT
CAATCAGGAAATGGCAAATATTCGTAGTCAAACACCTTTGCCGATTGAACCAGCACCTGTATTTAATCCTGTGCCAAGTT
TTAATTATTCTGCACAACAATTGCGTAGTCCATTCTTACCAAGTTCGTTGGCAAATGAATTAAAGGTGATGTCAGGAAAA
CGAGTGTATCCGAATTTCTCTAGACAACCGCAGCCACTTGAAAGTTATCCTTTAGAGTCGTTGACACTGAAAGGAAGTAT
GAAGGGCAATGCAGGACAAACGGTAGGATTAATCCAAACACCAGATGGTGAAATTGAACGTGTTCAACTGGGCAATTACA
TGGGGATGAATCAGGGTCGAATTATTGAAATTACACCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATCGAAAGACCACGCAGTCTAGTTCTAATTGGTCCAGTGGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TMR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

74.269

97.159

0.722
  pilP Acinetobacter baumannii D1279779

72.832

98.295

0.716