Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I9190_RS19525 Genome accession   NZ_CP066121
Coordinates   4219062..4219703 (-) Length   213 a.a.
NCBI ID   WP_004825390.1    Uniprot ID   A0A0A8TMP8
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4214062..4224703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS19505 (I9190_19505) aroK 4215015..4215557 (-) 543 WP_004825383.1 shikimate kinase AroK -
  I9190_RS19510 (I9190_19510) pilQ 4215594..4217765 (-) 2172 WP_058971043.1 type IV pilus secretin PilQ Machinery gene
  I9190_RS19515 (I9190_19515) comL 4217786..4218316 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  I9190_RS19520 (I9190_19520) comO 4218313..4219065 (-) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  I9190_RS19525 (I9190_19525) pilN 4219062..4219703 (-) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  I9190_RS19530 (I9190_19530) comM 4219703..4220761 (-) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene
  I9190_RS19535 (I9190_19535) ponA 4220925..4223465 (+) 2541 WP_151780670.1 penicillin-binding protein PBP1a -
  I9190_RS19540 (I9190_19540) - 4223525..4224328 (-) 804 WP_151780671.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23811.29 Da        Isoelectric Point: 5.1466

>NTDB_id=517533 I9190_RS19525 WP_004825390.1 4219062..4219703(-) (pilN) [Acinetobacter bereziniae strain GD0320]
MAKINLLPWRDELREQKKKQFVAICVGVALIGLATVLLAWFYFDHKLEDQEQANQLVTSTNQNLDMQLKTLDGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRVVPAQMYITKFSRVGDKFTIEGKAESPNTVAELLRGLEASEWYRNAFMNSFLA
AEENKNQAQTSVIPRVEESYGSFVVTVDLGEIASVADDSATKAEQVPAAGGAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=517533 I9190_RS19525 WP_004825390.1 4219062..4219703(-) (pilN) [Acinetobacter bereziniae strain GD0320]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGACGAGCTAAGAGAACAGAAAAAGAAACAATTTGTGGCAATCTGTGTGGG
TGTTGCATTGATTGGATTGGCAACTGTGTTATTGGCATGGTTTTATTTTGATCATAAGCTTGAAGATCAAGAGCAAGCCA
ATCAGTTGGTTACTAGTACCAATCAAAACTTAGATATGCAATTAAAAACTTTAGATGGTTTGCAAGAGCGTCGTAATGCC
ATTATTGAGCGAATGAAGTTGATTCAAGGTTTACAAGGACAACGTCCTGTGATTGTTCGCTTGGTTGATGAATTGGTTCG
TGTCGTTCCAGCACAAATGTACATCACGAAATTCAGTCGTGTTGGGGATAAATTTACCATCGAAGGTAAAGCTGAAAGTC
CGAATACCGTTGCTGAATTATTGCGTGGTTTGGAAGCTTCTGAATGGTATAGAAATGCCTTTATGAATTCATTCCTAGCT
GCAGAAGAAAATAAAAATCAAGCACAAACATCCGTGATTCCTCGAGTAGAAGAGTCTTATGGAAGCTTTGTGGTCACTGT
AGATTTAGGGGAAATCGCTTCTGTAGCAGATGATAGTGCAACAAAGGCTGAACAAGTTCCAGCTGCTGGGGGTGCGAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TMP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

72.77

100

0.728
  comN Acinetobacter baylyi ADP1

68.075

100

0.681