Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   I6I02_RS08990 Genome accession   NZ_CP066093
Coordinates   1966004..1966903 (-) Length   299 a.a.
NCBI ID   WP_155198347.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1961004..1971903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08975 (I6I02_08975) - 1961842..1963236 (+) 1395 WP_232621265.1 DUF4153 domain-containing protein -
  I6I02_RS08980 (I6I02_08980) - 1963288..1963620 (-) 333 WP_002886546.1 DUF805 domain-containing protein -
  I6I02_RS08985 (I6I02_08985) comA 1963733..1965829 (-) 2097 WP_198463488.1 peptide cleavage/export ABC transporter Regulator
  I6I02_RS08990 (I6I02_08990) comR 1966004..1966903 (-) 900 WP_155198347.1 XRE family transcriptional regulator Regulator
  I6I02_RS08995 (I6I02_08995) - 1967082..1967732 (-) 651 WP_107372520.1 phosphatase PAP2 family protein -
  I6I02_RS09000 (I6I02_09000) - 1967735..1968292 (-) 558 WP_198463489.1 ECF transporter S component -
  I6I02_RS09005 (I6I02_09005) - 1968603..1969112 (-) 510 WP_021143543.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6I02_RS09010 (I6I02_09010) trkA 1969390..1970739 (+) 1350 WP_002889909.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35184.65 Da        Isoelectric Point: 5.5756

>NTDB_id=517382 I6I02_RS08990 WP_155198347.1 1966004..1966903(-) (comR) [Streptococcus salivarius strain FDAARGOS_1045]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVINYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=517382 I6I02_RS08990 WP_155198347.1 1966004..1966903(-) (comR) [Streptococcus salivarius strain FDAARGOS_1045]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGACCGATTTATTGGATCATGATAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTCTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTATGAGAAATTCTTTGAACTTCTCCCAGAAGAAGAATTGTTAACTCTGGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCTAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTTATTAATTACTATTTCTTCCATCTTTATGGAAGAAAACAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTCTATAATATTGTTTTGTTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGTTATAAACCTAGTGTTTTTGTTCTCAAAGCCAAATATGAACTTCTTCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTACTAGAAGAAAGTATAAAGGCAGGTA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

99.331

100

0.993
  comR Streptococcus salivarius SK126

97.993

100

0.98
  comR Streptococcus thermophilus LMG 18311

95.318

100

0.953
  comR Streptococcus thermophilus LMD-9

94.649

100

0.946
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421