Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   I6I02_RS08985 Genome accession   NZ_CP066093
Coordinates   1963733..1965829 (-) Length   698 a.a.
NCBI ID   WP_198463488.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958733..1970829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS08960 (I6I02_08960) - 1960273..1960584 (-) 312 WP_002886559.1 urease subunit beta -
  I6I02_RS08965 (I6I02_08965) - 1960596..1960898 (-) 303 WP_002886558.1 urease subunit gamma -
  I6I02_RS08970 (I6I02_08970) - 1960923..1961438 (-) 516 WP_002886548.1 AmiS/UreI family transporter -
  I6I02_RS08975 (I6I02_08975) - 1961842..1963236 (+) 1395 WP_232621265.1 DUF4153 domain-containing protein -
  I6I02_RS08980 (I6I02_08980) - 1963288..1963620 (-) 333 WP_002886546.1 DUF805 domain-containing protein -
  I6I02_RS08985 (I6I02_08985) comA 1963733..1965829 (-) 2097 WP_198463488.1 peptide cleavage/export ABC transporter Regulator
  I6I02_RS08990 (I6I02_08990) comR 1966004..1966903 (-) 900 WP_155198347.1 XRE family transcriptional regulator Regulator
  I6I02_RS08995 (I6I02_08995) - 1967082..1967732 (-) 651 WP_107372520.1 phosphatase PAP2 family protein -
  I6I02_RS09000 (I6I02_09000) - 1967735..1968292 (-) 558 WP_198463489.1 ECF transporter S component -
  I6I02_RS09005 (I6I02_09005) - 1968603..1969112 (-) 510 WP_021143543.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6I02_RS09010 (I6I02_09010) trkA 1969390..1970739 (+) 1350 WP_002889909.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78527.46 Da        Isoelectric Point: 9.1917

>NTDB_id=517381 I6I02_RS08985 WP_198463488.1 1963733..1965829(-) (comA) [Streptococcus salivarius strain FDAARGOS_1045]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVEAAKQLDLETQAIRADLDLFKQENLSY
PFIVHVVKEGGLQHYYTVFGQIKGQLVIGDPDPSKKVIKMPLEEFAKEWTGVALFFVPGEAYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQAIIDRLIPQGAYNLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSITVI
LPYIKHVLSLPISFFSSRRTGEITSRFGDANTIIDALASTILSIFLDVTIVMTLAVALIVQNQSLFVMTLTVVPLYVLII
LAFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEDRRYREIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILWYGAQLVMEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKELSFKQLAF
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGQSGSGKTTLAKMLSGYYTKSSGHVTLDKDAISHAELRQMVTYVPQQTYV
FTGTILENLLLGFEGEVDEKKLIKVCQQADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSKQPILIFDEATS
GLDSDTESRVMANLAKIKRTMIFIAHRNSVRRHVSRVVTMVSGQIESDSANFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=517381 I6I02_RS08985 WP_198463488.1 1963733..1965829(-) (comA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGATTGTGGTGTCGCTGCCTTGGCCATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGAGAGTTGGCTCAGACTTCTCGTGAAGGTACTTCTGCGCTTGGTTTGGTGG
AAGCGGCCAAGCAGTTGGATCTTGAAACTCAGGCTATTCGTGCGGATTTAGACTTGTTTAAACAAGAAAACCTATCTTAT
CCTTTTATTGTACATGTGGTTAAAGAAGGTGGGCTACAACATTATTATACGGTGTTTGGTCAAATCAAGGGGCAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATGCCCTTAGAGGAATTTGCCAAAGAGTGGACGGGAGTTGCTC
TCTTTTTTGTTCCAGGAGAAGCCTATACTAAATACAAAGAAGATGTACCTGGACTTCTTTCTTTTTTACCAATTTTGTTT
CGTCGTAAGGGTTTGATTGCAGTTATTGTCTTATTAAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAAGCTATTATCGACCGCTTGATTCCTCAGGGGGCCTATAATCTTCTGACCATGATTTCGCTAGGCTTATGTATCTCTT
ATCTTGCTCAACAAGTTTTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGTAATTACCTGTCCATTACTGTCATT
CTTCCTTATATCAAGCATGTCCTTTCCCTGCCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATCACGTCACGTTT
TGGGGATGCTAACACTATTATCGATGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTC
TAGCTGTAGCTCTTATTGTACAAAATCAGTCACTTTTTGTGATGACTCTCACAGTAGTTCCTCTTTATGTTTTAATCATT
CTGGCATTCTATAAGCTTTTTGAAAAGGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGTATTGAAACCTTAAAATCCTTGAGGGTTGAGGATAGACGTTATCGGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCCTTGTCTAAGGCCAAGTGGCAATTAACGCAGGATGGGTTAAAGACAGGGGTTCAGTTAGTTTCT
AATGTCTTTATCCTCTGGTATGGGGCACAATTGGTTATGGAAGGGCAACTATCTGCAGGTCAGTTGATTACCTATAATAT
GTTGTTGAATTATTTTACAACTCCTTTAATTAATATCATCAATCTCCAATCTAAAATTCAGCAAGCCAAAGTCGCCAATA
ATCGTCTTCAAGAAGTATATGTTGTGGACAAGGAAGAAAAAGGAAAACTTAAAGAGTTATCTTTTAAACAACTTGCTTTT
AAAGGAGTTAGTCACCGTTTTAGTTATCAGCAAGAGACTCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
CGCCCTCATGGGTCAGAGTGGTTCTGGAAAAACGACCTTAGCTAAAATGTTGTCAGGTTATTATACGAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTAGCCATGCGGAGTTGCGTCAAATGGTGACTTACGTTCCCCAGCAGACCTATGTG
TTTACGGGAACCATTTTAGAAAATCTGCTATTAGGATTTGAAGGAGAAGTTGACGAGAAAAAGCTTATTAAAGTTTGCCA
ACAAGCTGATATCTTAGAGGATATTCAAAAAATGCCACTAGGCTTTCAGACCCAAGTATCTGAAGACGGTGGTTTGTCTG
GCGGTCAAAAACAAAGATTAGCTATAGCAAGGGCTCTATTGTCCAAACAACCTATCTTGATTTTTGACGAAGCTACTAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTCATGGCTAATCTTGCTAAGATTAAACGAACAATGATTTTTATTGCTCATCG
CAATAGTGTACGTCGACATGTCAGTCGTGTAGTGACCATGGTGAGTGGCCAGATTGAGTCAGACAGTGCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(494-640)

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter transmembrane region (ABC_membrane)

(167-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.401

98.997

0.529
  comA Streptococcus gordonii str. Challis substr. CH1

52.874

99.713

0.527
  comA Streptococcus mitis NCTC 12261

52.967

98.997

0.524
  comA Streptococcus pneumoniae Rx1

52.822

98.997

0.523
  comA Streptococcus pneumoniae D39

52.822

98.997

0.523
  comA Streptococcus pneumoniae R6

52.822

98.997

0.523
  comA Streptococcus pneumoniae TIGR4

52.677

98.997

0.521
  comA/nlmT Streptococcus mutans UA159

50.435

98.854

0.499