Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6H78_RS03960 Genome accession   NZ_CP066059
Coordinates   840225..842204 (-) Length   659 a.a.
NCBI ID   WP_198460147.1    Uniprot ID   A0A7T4IU67
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 835225..847204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03940 (I6H78_03940) amiF 835720..836649 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6H78_RS03945 (I6H78_03945) amiE 836660..837727 (-) 1068 WP_061852929.1 ABC transporter ATP-binding protein Regulator
  I6H78_RS03950 (I6H78_03950) amiD 837736..838662 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  I6H78_RS03955 (I6H78_03955) amiC 838662..840158 (-) 1497 WP_000759891.1 ABC transporter permease Regulator
  I6H78_RS03960 (I6H78_03960) amiA 840225..842204 (-) 1980 WP_198460147.1 peptide ABC transporter substrate-binding protein Regulator
  I6H78_RS03970 (I6H78_03970) - 842721..844052 (-) 1332 WP_198460148.1 hemolysin family protein -
  I6H78_RS03975 (I6H78_03975) endA 844188..845012 (-) 825 WP_198460149.1 DNA/RNA non-specific endonuclease Machinery gene
  I6H78_RS03980 (I6H78_03980) - 845053..845247 (-) 195 WP_198460150.1 DNA-directed RNA polymerase subunit beta -
  I6H78_RS03985 (I6H78_03985) murA 845234..846517 (-) 1284 WP_198460151.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6H78_RS03990 (I6H78_03990) - 846541..846771 (-) 231 WP_002892633.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72712.81 Da        Isoelectric Point: 4.7606

>NTDB_id=516950 I6H78_RS03960 WP_198460147.1 840225..842204(-) (amiA) [Streptococcus oralis strain FDAARGOS_1021]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYSADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVKAKDFVNGLKHAADNKSEALYLAEDSVKGLADYTAGNNKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYAIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTNEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTAKNYIARIQSFKQSVETVLGEDNVVIDIQQISKDE
LNNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLILPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=516950 I6H78_RS03960 WP_198460147.1 840225..842204(-) (amiA) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCACCAAAAAATTATGGCTATGTTTATTCAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTTGCCACTTCAAATGGTATCGACGGTCTTTTCACAAACGACAAGTATGGGAACCTAGTTCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTTAAATGGATGAC
ATCAGATGGCGAAGAGTATGCTGAAGTAAAAGCCAAAGACTTTGTAAATGGCTTGAAACACGCGGCTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTAAAAGGTCTAGCTGACTATACAGCTGGAAACAATAAAGATTTTTCTTCAGTA
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAACCAGCCAGAACCATACTGGAACTCTAAGATGGCCTA
CGCAATCTTTTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGGGCTGACTTTGCCAAAGCAACTGACCCTACATCAT
TGCTTTACAATGGTCCGTTCTTACTGAAAGGTTTGACTGCTAAGTCTTCTATTGAGTTCGCTAAGAATGAAAACTACTGG
GACAAAGATAATGTTCACATTGATAAAGTAACCCTTGCTTTCTATGATGGGTCAGACCAAGAATCAATTGAACGTAACTT
TACAAGTGGGGCTTATAGTTATGCCCGCCTCTTCCCCACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGGCCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTAATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
ACTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCAGCTTACGGTGATGAGTGGAAGAAT
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCCGAATTTGCGAAAGCTAAAACTGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATTCACTTGGATATCCCAGTAGACCAAACTGCTAAGAACTATATCGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGATAATGTAGTTATTGATATCCAACAAATTTCTAAAGATGAG
TTGAACAATATCACTTACTACGCAGCTAGCGCAGCAGCAGAAGATTGGGACCTTTCAGGAGCAGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACGAATGCTGAACAAACAAAAACATACATGGGTTATGAAG
GTGCAGATAATGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCTGCAAAAGAAACCAAC
GACTTGAATGTTCGTTATGAAAAATATGCGGCTGCTCAAGCTTGGTTGACAGACAGCTCCCTCATCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTACCATTCACAGCATCATACAGCCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGACAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4IU67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.982

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675