Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6H78_RS03950 Genome accession   NZ_CP066059
Coordinates   837736..838662 (-) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 832736..843662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03930 (I6H78_03930) trkA 832839..834188 (+) 1350 WP_198460146.1 Trk system potassium transporter TrkA -
  I6H78_RS03935 (I6H78_03935) - 834192..835631 (+) 1440 WP_125422924.1 TrkH family potassium uptake protein -
  I6H78_RS03940 (I6H78_03940) amiF 835720..836649 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6H78_RS03945 (I6H78_03945) amiE 836660..837727 (-) 1068 WP_061852929.1 ABC transporter ATP-binding protein Regulator
  I6H78_RS03950 (I6H78_03950) amiD 837736..838662 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  I6H78_RS03955 (I6H78_03955) amiC 838662..840158 (-) 1497 WP_000759891.1 ABC transporter permease Regulator
  I6H78_RS03960 (I6H78_03960) amiA 840225..842204 (-) 1980 WP_198460147.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=516948 I6H78_RS03950 WP_000103692.1 837736..838662(-) (amiD) [Streptococcus oralis strain FDAARGOS_1021]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=516948 I6H78_RS03950 WP_000103692.1 837736..838662(-) (amiD) [Streptococcus oralis strain FDAARGOS_1021]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACCGTCTTTATGTTAGGAATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTTAATGACTTCTCTGCTCGT
TTTATCAAACCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGATGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATTTGGGGGA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAATCTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCATTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818